RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CCDC144CP	Q8IYA2	1237 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	CTCFL	Q8NI51	663 aa	Predicted RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	C12orf42	Q96LP6	360 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	ZIC5	Q96T25	663 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	BRPF3	Q9ULD4	1205 aa		11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	FRMPD2	Q68DX3	1309 aa	Predicted RBP	11.86	□□□□□ -0.51
CPSF7-221	ENST00000543545	GOLGA8A	A7E2F4	631 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	BTBD19	C9JJ37	291 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	TMEM232	C9JQI7	657 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	DHX16	O60231	1041 aa	Known RBP	11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	GOLGA8H	P0CJ92	632 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	PDHB	P11177	359 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	KIF5B	P33176	963 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	STK3	Q13188	491 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	TREML2	Q5T2D2	321 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	APOA5	Q6Q788	366 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	REM2	Q8IYK8	340 aa	Predicted RBP	11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	FBXL16	Q8N461	479 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	GMCL1	Q96IK5	515 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	AGTPBP1	Q9UPW5	1226 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	SIPA1L1	O43166	1804 aa		11.85	□□□□□ -0.51
CPSF7-221	ENST00000543545	TESPA1	A2RU30	521 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	PDHX	O00330	501 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	FLOT1	O75955	427 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	MAP2K2	P36507	400 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	METAP2	P50579	478 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	CCT2	P78371	535 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	TROAP	Q12815	778 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	MOGS	Q13724	837 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	GRM4	Q14833	912 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	RTN1	Q16799	776 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	ASPRV1	Q53RT3	343 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	GPATCH4	Q5T3I0	446 aa	Known RBP	11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	GPAT2	Q6NUI2	795 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	RASGRP2	Q7LDG7	609 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	ANKRD23	Q86SG2	305 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	IFNL1	Q8IU54	200 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	FANCB	Q8NB91	859 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	IL27	Q8NEV9	243 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	CHURC1	Q8WUH1	139 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	KIFC2	Q96AC6	838 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	PTPN18	Q99952	460 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	AGXT2	Q9BYV1	514 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	UBA5	Q9GZZ9	404 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	SLK	Q9H2G2	1235 aa	Predicted RBP	11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	VAT1L	Q9HCJ6	419 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	FEM1B	Q9UK73	627 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	PNMA3	Q9UL41	463 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	TPCN1	Q9ULQ1	816 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	LIMCH1	Q9UPQ0	1083 aa		11.84	□□□□□ -0.51
CPSF7-221	ENST00000543545	LAMB1	P07942	1786 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	CCDC196	A0A1B0GTZ2	297 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	KLRF2	D3W0D1	207 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	PDIA3	P30101	505 aa	Known RBP	11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	SLC16A2	P36021	539 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	TM4SF4	P48230	202 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	MCM2	P49736	904 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	GNAQ	P50148	359 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZNF543	Q08ER8	600 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	COG2	Q14746	738 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	TTBK2	Q6IQ55	1244 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	CATSPERG	Q6ZRH7	1159 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	FAM160B2	Q86V87	743 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	FAM43A	Q8N2R8	423 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	SMCR8	Q8TEV9	937 aa	Predicted RBP	11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZNF274	Q96GC6	653 aa	Predicted RBP	11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	HOXC10	Q9NYD6	342 aa		11.83	□□□□□ -0.52
CPSF7-221	ENST00000543545	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	CPLX1	O14810	134 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	SNHG28	P0DPA3	235 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	CYP2C8	P10632	490 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	HOXA7	P31268	230 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	STAT2	P52630	851 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	TAF1C	Q15572	869 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	CPLX2	Q6PUV4	134 aa	Known RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	STAG2	Q8N3U4	1231 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	CCDC82	Q8N4S0	544 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	PARK7	Q99497	189 aa	Known RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	MAP3K14	Q99558	947 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	P2RX7	Q99572	595 aa	Known RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	SLF1	Q9BQI6	1058 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	LZTS2	Q9BRK4	669 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	ASCC2	Q9H1I8	757 aa	Predicted RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	FBXO28	Q9NVF7	368 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	RBM28	Q9NW13	759 aa	Known RBP	11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	MAD2L2	Q9UI95	211 aa		11.82	□□□□□ -0.52
CPSF7-221	ENST00000543545	TRPM7	Q96QT4	1865 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PALM3	A6NDB9	673 aa	Predicted RBP	11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZBED4	O75132	1171 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	ALDH1A1	P00352	501 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	DSG3	P32926	999 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	ADD1	P35611	737 aa	Known RBP	11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	RCAN1	P53805	252 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	EVC	P57679	992 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PPP2R5B	Q15173	497 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	ME3	Q16798	604 aa		11.81	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms