RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 PCYT1AP49585 367 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 ATP1A2P50993 1020 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 RINT1Q6NUQ1 792 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 RSBN1LQ6PCB5 846 aaPredicted RBP21.21■□□□□ 0.99
HDAC4-215ENST00000543185 STAM2O75886 525 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 LETM2Q2VYF4 491 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 INTS9Q9NV88 658 aaKnown RBP21.21■□□□□ 0.99
HDAC4-215ENST00000543185 MYO5CQ9NQX4 1742 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 KPNA2P52292 529 aaKnown RBP21.21■□□□□ 0.99
HDAC4-215ENST00000543185 FLT4P35916 1363 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 TRPC6Q9Y210 931 aa21.21■□□□□ 0.99
HDAC4-215ENST00000543185 NXNQ6DKJ4 435 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 FAM81BQ96LP2 452 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 FNBP4Q8N3X1 1017 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 SCHIP1Q9P0W5 487 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 LDHBP07195 334 aaKnown RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 TRIM56Q9BRZ2 755 aaKnown RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 LMBRD1Q9NUN5 540 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 KCNK3O14649 394 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 CUL1Q13616 776 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 PEG3Q9GZU2 1588 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 HGSO14964 777 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 GCNT3O95395 438 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 DTNBP1Q96EV8 351 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 TM6SF1Q9BZW5 370 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 PACSIN2Q9UNF0 486 aaPredicted RBP21.2■□□□□ 0.98
HDAC4-215ENST00000543185 UNC13AQ9UPW8 1703 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 H7C1D1 291 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 RRAGAQ7L523 313 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 ANGPTL3Q9Y5C1 460 aa21.2■□□□□ 0.98
HDAC4-215ENST00000543185 ATP5J2-PTCD1G3V325 749 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 SLC27A2O14975 620 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 KCNA4P22459 653 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 TMED1Q13445 227 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 MRRFQ96E11 262 aaKnown RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 SYF2O95926 243 aaKnown RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 SETDB2Q96T68 719 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 TRPM2O94759 1503 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 KRT81Q14533 505 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 ARHGEF10LQ9HCE6 1279 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 CCT5P48643 541 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 ZNF174Q15697 407 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 TRIM6Q9C030 488 aaPredicted RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 TCHHQ07283 1943 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 EEF1DP29692 281 aaKnown RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 ZNF215Q9UL58 517 aaPredicted RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 MMS22LQ6ZRQ5 1243 aa21.19■□□□□ 0.98
HDAC4-215ENST00000543185 PRPF6O94906 941 aaKnown RBP21.19■□□□□ 0.98
HDAC4-215ENST00000543185 SPC25Q9HBM1 224 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 BRDTQ58F21 947 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-215ENST00000543185 ZNF449Q6P9G9 518 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 REXO1Q8N1G1 1221 aaKnown RBP21.18■□□□□ 0.98
HDAC4-215ENST00000543185 CALR3Q96L12 384 aaKnown RBP21.18■□□□□ 0.98
HDAC4-215ENST00000543185 JPH2Q9BR39 696 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-215ENST00000543185 DCTN3O75935 186 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 RFC4P35249 363 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 MYCNP04198 464 aaPredicted RBP21.18■□□□□ 0.98
HDAC4-215ENST00000543185 HSPA6P17066 643 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 MORC3Q14149 939 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 MAGEA9P43362 315 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 GALNT17Q6IS24 598 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 PODNQ7Z5L7 613 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 PPP2R5DQ14738 602 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 TTC6Q86TZ1 520 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 DENND2AQ9ULE3 1009 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 MAD1L1Q9Y6D9 718 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 RGS12O14924 1447 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 CNPY4Q8N129 248 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 MORC4Q8TE76 937 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 VTI1AQ96AJ9 217 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 NLRP3Q96P20 1036 aa21.18■□□□□ 0.98
HDAC4-215ENST00000543185 RASGRF2O14827 1237 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 PLS1Q14651 629 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 ANKRD42Q8N9B4 389 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 ABCD1P33897 745 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 BLMP54132 1417 aaPredicted RBP21.17■□□□□ 0.98
HDAC4-215ENST00000543185 TRIM50Q86XT4 487 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 EXOC5O00471 708 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 SEPT8Q92599 483 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 NUB1Q9Y5A7 615 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 HADHQ16836 314 aaKnown RBP21.17■□□□□ 0.98
HDAC4-215ENST00000543185 KRT80Q6KB66 452 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 ANKRD35Q8N283 1001 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 SRGAP2BP0DMP2 458 aa21.17■□□□□ 0.98
HDAC4-215ENST00000543185 CCDC92Q53HC0 331 aaPredicted RBP21.17■□□□□ 0.98
HDAC4-215ENST00000543185 PDE6CP51160 858 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 NONOQ15233 471 aaKnown RBP eCLIP21.16■□□□□ 0.981e-6■■■■□ 22.3
HDAC4-215ENST00000543185 NOP53Q9NZM5 478 aaKnown RBP21.16■□□□□ 0.98
HDAC4-215ENST00000543185 INHBAP08476 426 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 MRPL40Q9NQ50 206 aaKnown RBP21.16■□□□□ 0.98
HDAC4-215ENST00000543185 E9PMD0 336 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 EXOC3O60645 756 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 CA8P35219 290 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 ADCY7P51828 1080 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 CDC23Q9UJX2 597 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 TRAPPC8Q9Y2L5 1435 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 PDXDC1Q6P996 788 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 C16orf87Q6PH81 154 aa21.16■□□□□ 0.98
HDAC4-215ENST00000543185 PAWRQ96IZ0 340 aaKnown RBP21.16■□□□□ 0.98
HDAC4-215ENST00000543185 MAST3O60307 1309 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms