RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 FGRP09769 529 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 HMGB2P26583 209 aaKnown RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 PPARAQ07869 468 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 RASA3Q14644 834 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 AP1ARQ63HQ0 302 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 NAIF1Q69YI7 327 aaPredicted RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 C16orf87Q6PH81 154 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 APOA5Q6Q788 366 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 CACTIN-AS1Q8N1I8 211 aa9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 DDX60LQ5H9U9 1706 aaKnown RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 BAZ2AQ9UIF9 1905 aaKnown RBP9.05□□□□□ -0.96
PDLIM5-221ENST00000542407 ELP1O95163 1332 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 ANKRD65E5RJM6 399 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 RXRBP28702 533 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 ADD1P35611 737 aaKnown RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 LIFRP42702 1097 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 SMC1AQ14683 1233 aaKnown RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 GRIK5Q16478 980 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 ZFYVE27Q5T4F4 411 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 SRLQ86TD4 932 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 OGFOD1Q8N543 542 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 PHC3Q8NDX5 983 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 THOC1Q96FV9 657 aaKnown RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 CNNM2Q9H8M5 875 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 FAM217BQ9NTX9 383 aaPredicted RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 CPSF2Q9P2I0 782 aaKnown RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 BIN2Q9UBW5 565 aaPredicted RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.04□□□□□ -0.963e-6■■□□□ 11.9
PDLIM5-221ENST00000542407 QSER1Q2KHR3 1735 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 NEMFO60524 1076 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 BBOX1O75936 387 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 IL1R1P14778 569 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 TRAF1Q13077 416 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 TTC31Q49AM3 519 aaPredicted RBP9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 SPATA32Q96LK8 384 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 KRT23Q9C075 422 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 POLLQ9UGP5 575 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 SYNRGQ9UMZ2 1314 aa9.04□□□□□ -0.96
PDLIM5-221ENST00000542407 IPO5O00410 1097 aaKnown RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 PPFIA3O75145 1194 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 NR1I2O75469 434 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 EIF3JO75822 258 aaKnown RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 MYBL2P10244 700 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CDC27P30260 824 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CCZ1BP86790 482 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CCZ1P86791 482 aaPredicted RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 EVX2Q03828 476 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 NOM1Q5C9Z4 860 aaKnown RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 DCAF8Q5TAQ9 597 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 WWC2Q6AWC2 1192 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 MFSD6Q6ZSS7 791 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 RAB11FIP4Q86YS3 637 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 SLX1AQ9BQ83 275 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 DNAI1Q9UI46 699 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 JAG2Q9Y219 1238 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 A6NJR5 290 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 URI1O94763 535 aaPredicted RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 ATP2B4P23634 1241 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 MCM6Q14566 821 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 NTRK3Q16288 839 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 SKIDA1Q1XH10 827 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 WDR78Q5VTH9 848 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 ZNF804AQ7Z570 1209 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 NLGN1Q8N2Q7 840 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 ARHGEF10LQ9HCE6 1279 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 MKRN1Q9UHC7 482 aaKnown RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CYP2D7A0A087X1C5 515 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 KIF2AO00139 706 aaPredicted RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 UFL1O94874 794 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 FAM200BP0CF97 657 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 TMEM67Q5HYA8 995 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 MCTP2Q6DN12 878 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 LEKR1Q6ZMV7 388 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 ANKRD13AQ8IZ07 590 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 FBXO18Q8NFZ0 1043 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 TBC1D16Q8TBP0 767 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 ZSCAN16Q9H4T2 348 aaPredicted RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CTDP1Q9Y5B0 961 aaPredicted RBP9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 CDK5RAP2Q96SN8 1893 aa9.03□□□□□ -0.96
PDLIM5-221ENST00000542407 RANBP6O60518 1105 aaKnown RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 SRGNP10124 158 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 CEBPZQ03701 1054 aaKnown RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 IFT88Q13099 833 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 SEC23AQ15436 765 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 POTEAQ6S8J7 498 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 NFXL1Q6ZNB6 911 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 PACS2Q86VP3 889 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 SUGP1Q8IWZ8 645 aaKnown RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 GOLGA5Q8TBA6 731 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 WDR66Q8TBY9 1149 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 CD209Q9NNX6 404 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 DCP1AQ9NPI6 582 aaPredicted RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 AATFQ9NY61 560 aaKnown RBP eCLIP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 ORC3Q9UBD5 711 aaPredicted RBP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 GGA1Q9UJY5 639 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 H3BQV1 296 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 SASH3O75995 380 aa9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 METAP2P50579 478 aaKnown RBP eCLIP9.02□□□□□ -0.97
PDLIM5-221ENST00000542407 IFFO2Q5TF58 517 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms