RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 MBNL3Q9NUK0 354 aaKnown RBP5.04□□□□□ -1.6
USP28-210ENST00000542033 PPP1R1BQ9UD71 204 aaPredicted RBP5.04□□□□□ -1.6
USP28-210ENST00000542033 DUSP13Q9UII6 198 aa5.04□□□□□ -1.6
USP28-210ENST00000542033 R3HCC1Q9Y3T6 440 aaKnown RBP5.04□□□□□ -1.6
USP28-210ENST00000542033 LRRN2O75325 713 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 SRFP11831 508 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 ATP2B1P20020 1258 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 LTKP29376 864 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 SF3A1Q15459 793 aaKnown RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 ZYXQ15942 572 aaKnown RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 BBS9Q3SYG4 887 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 NBPF12Q5TAG4 269 aaPredicted RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 CREG2Q8IUH2 290 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 LRRN4CLQ8ND94 238 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 ZNF512BQ96KM6 892 aaPredicted RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 KRTAP4-7Q9BYR0 210 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 DUSP15Q9H1R2 295 aaPredicted RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 PHAXQ9H814 394 aaKnown RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 ZNF408Q9H9D4 720 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 SUCOQ9UBS9 1254 aaKnown RBP5.03□□□□□ -1.6
USP28-210ENST00000542033 PRKAG3Q9UGI9 489 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 ADAMTS6Q9UKP5 1117 aa5.03□□□□□ -1.6
USP28-210ENST00000542033 A0A1W2PQH9 124 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 SMAD7O15105 426 aaKnown RBP5.02□□□□□ -1.61
USP28-210ENST00000542033 STK10O94804 968 aaKnown RBP5.02□□□□□ -1.61
USP28-210ENST00000542033 ITGB5P18084 799 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 ETFBP38117 255 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 PMS1P54277 932 aaKnown RBP5.02□□□□□ -1.61
USP28-210ENST00000542033 CASP7P55210 303 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 NMIQ13287 307 aaPredicted RBP5.02□□□□□ -1.61
USP28-210ENST00000542033 CCDC144CPQ8IYA2 1237 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 FAM169BQ8N8A8 192 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 FLAD1Q8NFF5 587 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 SMARCC1Q92922 1105 aaPredicted RBP5.02□□□□□ -1.61
USP28-210ENST00000542033 VWCEQ96DN2 955 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 ALPK1Q96QP1 1244 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 PRDM7Q9NQW5 492 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 ACTR10Q9NZ32 417 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 FBXL21Q9UKT6 434 aa5.02□□□□□ -1.61
USP28-210ENST00000542033 ESR1P03372 595 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 AFMP43652 599 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 SLC7A5Q01650 507 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 EGR3Q06889 387 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 GAB4Q2WGN9 574 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 NBPF9Q3BBW0 867 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 GNPTABQ3T906 1256 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 TDRD10Q5VZ19 366 aaKnown RBP5.01□□□□□ -1.61
USP28-210ENST00000542033 SYTL5Q8TDW5 730 aaPredicted RBP5.01□□□□□ -1.61
USP28-210ENST00000542033 FAM86C1Q9NVL1 165 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 SLAMF8Q9P0V8 285 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 ZNF214Q9UL59 606 aaPredicted RBP5.01□□□□□ -1.61
USP28-210ENST00000542033 PCDHB12Q9Y5F1 795 aa5.01□□□□□ -1.61
USP28-210ENST00000542033 LTBP3Q9NS15 1303 aa5□□□□□ -1.61
USP28-210ENST00000542033 TP53P04637 393 aaPredicted RBP5□□□□□ -1.61
USP28-210ENST00000542033 RAC2P15153 192 aa5□□□□□ -1.61
USP28-210ENST00000542033 GTF2F1P35269 517 aaKnown RBP eCLIP5□□□□□ -1.61
USP28-210ENST00000542033 GDNFP39905 211 aa5□□□□□ -1.61
USP28-210ENST00000542033 AUHQ13825 339 aaKnown RBP5□□□□□ -1.61
USP28-210ENST00000542033 LARP1BQ659C4 914 aaKnown RBP5□□□□□ -1.61
USP28-210ENST00000542033 VHLLQ6RSH7 139 aa5□□□□□ -1.61
USP28-210ENST00000542033 ANKS3Q6ZW76 656 aa5□□□□□ -1.61
USP28-210ENST00000542033 CKAP2LQ8IYA6 745 aa5□□□□□ -1.61
USP28-210ENST00000542033 DAGLBQ8NCG7 672 aa5□□□□□ -1.61
USP28-210ENST00000542033 SREK1Q8WXA9 508 aaKnown RBP5□□□□□ -1.61
USP28-210ENST00000542033 DHX38Q92620 1227 aaKnown RBP5□□□□□ -1.61
USP28-210ENST00000542033 PRR13Q9NZ81 148 aa5□□□□□ -1.61
USP28-210ENST00000542033 TMEM59LQ9UK28 342 aa5□□□□□ -1.61
USP28-210ENST00000542033 PCDHB10Q9UN67 800 aa5□□□□□ -1.61
USP28-210ENST00000542033 CTNND2Q9UQB3 1225 aa5□□□□□ -1.61
USP28-210ENST00000542033 SSU72P8A0A1W2PR75 194 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 C9IYK1 514 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 PAPLNO95428 1278 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 ENDOUP21128 410 aaKnown RBP4.99□□□□□ -1.61
USP28-210ENST00000542033 DUSP4Q13115 394 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 TCEAL1Q15170 157 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 FXNQ16595 210 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 NOL9Q5SY16 702 aaKnown RBP4.99□□□□□ -1.61
USP28-210ENST00000542033 PPFIBP1Q86W92 1011 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 C7orf61Q8IZ16 206 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 ZNF655Q8N720 491 aaPredicted RBP4.99□□□□□ -1.61
USP28-210ENST00000542033 HDAC8Q9BY41 377 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 TRIM55Q9BYV6 548 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 PRDM14Q9GZV8 571 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 RNF114Q9Y508 228 aa4.99□□□□□ -1.61
USP28-210ENST00000542033 SHISA3A0PJX4 238 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 WASH4PA8MWX3 477 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 RBAK-RBAKDNI3L0D1 243 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 U2SURPO15042 1029 aaKnown RBP4.98□□□□□ -1.61
USP28-210ENST00000542033 SIGLEC6O43699 453 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 DDAH1O94760 285 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 TXKP42681 527 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 PCBP3P57721 371 aaKnown RBP4.98□□□□□ -1.61
USP28-210ENST00000542033 NCAPHQ15003 741 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 AXDND1Q5T1B0 1012 aaPredicted RBP4.98□□□□□ -1.61
USP28-210ENST00000542033 DCAF15Q66K64 600 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 HEATR6Q6AI08 1181 aaKnown RBP4.98□□□□□ -1.61
USP28-210ENST00000542033 KIAA1211LQ6NV74 962 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 RNF111Q6ZNA4 994 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 TMC3Q7Z5M5 1100 aa4.98□□□□□ -1.61
USP28-210ENST00000542033 ZSWIM9Q86XI8 627 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms