RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 C16orf86Q6ZW13 317 aa18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 SH3RF1Q7Z6J0 888 aa18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 LENG1Q96BZ8 264 aaPredicted RBP18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 FAM161BQ96MY7 647 aa18.66■□□□□ 0.58
CLSTN3-213ENST00000541953 WDR46O15213 610 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 SEPT4O43236 478 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 STRNO43815 780 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 MYCNP04198 464 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 TAL1P17542 331 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 TRIM60Q495X7 471 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 C9orf50Q5SZB4 431 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 CTR9Q6PD62 1173 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 SLC39A5Q6ZMH5 540 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 REPS2Q8NFH8 660 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 FERMT2Q96AC1 680 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 ARHGEF10LQ9HCE6 1279 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 ATP8A2Q9NTI2 1148 aa18.65■□□□□ 0.58
CLSTN3-213ENST00000541953 POTEB2H3BUK9 544 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 ADCYAP1R1P41586 468 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 SNX17Q15036 470 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 LRRC41Q15345 812 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 MB21D1Q8N884 522 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 NUP88Q99567 741 aaPredicted RBP18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 MROH8Q9H579 483 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 PDLIM7Q9NR12 457 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 DDX19BQ9UMR2 479 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 ADAMTS5Q9UNA0 930 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 SLC4A4Q9Y6R1 1079 aa18.64■□□□□ 0.57
CLSTN3-213ENST00000541953 RAB11FIP3O75154 756 aa18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 HMMRO75330 724 aa18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 ITGB8P26012 769 aa18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 STK11IPQ8N1F8 1099 aa18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 PRDM5Q9NQX1 630 aaPredicted RBP18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 ZNF214Q9UL59 606 aaPredicted RBP18.63■□□□□ 0.57
CLSTN3-213ENST00000541953 TRIM43BA6NCK2 446 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 UBE3CQ15386 1083 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 SHHQ15465 462 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 FAM83BQ5T0W9 1011 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 TSHZ3Q63HK5 1081 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 ABRAQ8N0Z2 381 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 BADQ92934 168 aa18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 TRIM43Q96BQ3 446 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 LBHD1Q9BQE6 289 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-213ENST00000541953 KBTBD13C9JR72 458 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 FCER1AP12319 257 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 DIEXFQ68CQ4 756 aaKnown RBP18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 RIOX2Q8IUF8 465 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 ARRDC4Q8NCT1 418 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 CCDC17Q96LX7 622 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 PPP1R9AQ9ULJ8 1098 aa18.61■□□□□ 0.57
CLSTN3-213ENST00000541953 VWA5AO00534 786 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 PGK1P00558 417 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 IRX5P78411 483 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 ZNF792Q3KQV3 632 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 MMP19Q99542 508 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 SH2D4AQ9H788 454 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 EPB41L4AQ9HCS5 686 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 RIPK3Q9Y572 518 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 MYH4Q9Y623 1939 aa18.6■□□□□ 0.57
CLSTN3-213ENST00000541953 RAD21O60216 631 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 ZNF865P0CJ78 1059 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 RASA1P20936 1047 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 EPHB4P54760 987 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 OSBP2Q969R2 916 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 STRBPQ96SI9 672 aaKnown RBP18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 TINF2Q9BSI4 451 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 KANSL2Q9H9L4 492 aa18.59■□□□□ 0.57
CLSTN3-213ENST00000541953 ROBO3Q96MS0 1386 aa18.58■□□□□ 0.57
CLSTN3-213ENST00000541953 GSG1L2A8MUP6 293 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 STAT3P40763 770 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 TLE2Q04725 743 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 FAM109BQ6ICB4 259 aaPredicted RBP18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 XPNPEP3Q9NQH7 507 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 PRKAG2Q9UGJ0 569 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 PHF24Q9UPV7 400 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 MCM3APO60318 1980 aa18.58■□□□□ 0.56
CLSTN3-213ENST00000541953 ADCY6O43306 1168 aa18.57■□□□□ 0.56
CLSTN3-213ENST00000541953 SLC25A27O95847 323 aa18.57■□□□□ 0.56
CLSTN3-213ENST00000541953 MS4A1P11836 297 aa18.57■□□□□ 0.56
CLSTN3-213ENST00000541953 LRRCC1Q9C099 1032 aa18.57■□□□□ 0.56
CLSTN3-213ENST00000541953 SLC5A4Q9NY91 659 aa18.57■□□□□ 0.56
CLSTN3-213ENST00000541953 A0A1W2PQ45 241 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 A0A1W2PQY0 241 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 MYADML2A6NDP7 307 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 M0R2C6 588 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 ADAMTS4O75173 837 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 NDUFB10O96000 172 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 FGD4Q96M96 766 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 COL25A1Q9BXS0 654 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 TTYH1Q9H313 450 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 GOPCQ9HD26 462 aa18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 ARPP21Q9UBL0 812 aaPredicted RBP18.56■□□□□ 0.56
CLSTN3-213ENST00000541953 CHD9Q3L8U1 2897 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 IGKV6D-41A0A0C4DH26 115 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 PRDM1O75626 825 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 SNAI1O95863 264 aaPredicted RBP18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 RARBP10826 455 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 KCTD2Q14681 263 aa18.55■□□□□ 0.56
CLSTN3-213ENST00000541953 SBK1Q52WX2 424 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms