RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 CCDC148Q8NFR7 591 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 CHAMP1Q96JM3 812 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 FEZ1Q99689 392 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 GOPCQ9HD26 462 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 GPCPD1Q9NPB8 672 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 GJB4Q9NTQ9 266 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 VPS54Q9P1Q0 977 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 CFAP45Q9UL16 551 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 CNPY2Q9Y2B0 182 aa8.52□□□□□ -1.05
VPS53-205ENST00000541903 DCAF8L1A6NGE4 600 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 PHF20L1A8MW92 1017 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 F5H6K3 240 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 hCG_1984214I3L0E3 225 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 PRPF40AO75400 957 aaKnown RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 NDUFB10O96000 172 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 CALML3P27482 149 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 KRT2P35908 639 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 NLRP5P59047 1200 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 KLRC3Q07444 240 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 SKOR2Q2VWA4 1001 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 FAM173BQ6P4H8 233 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 KCTD1Q719H9 257 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 HEATR3Q7Z4Q2 680 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 HOMER1Q86YM7 354 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 SIAH1Q8IUQ4 282 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 DIS3L2Q8IYB7 885 aaKnown RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 FAM177A1Q8N128 213 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 ZNF713Q8N859 430 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 TMEM87AQ8NBN3 555 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 ZC3H15Q8WU90 426 aaKnown RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 CCDC12Q8WUD4 166 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 GMCL1Q96IK5 515 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 WRNIP1Q96S55 665 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 ANP32EQ9BTT0 268 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 SCAND2PQ9GZW5 306 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 FOXP1Q9H334 677 aaPredicted RBP8.51□□□□□ -1.05
VPS53-205ENST00000541903 SH3GLB2Q9NR46 395 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 PICK1Q9NRD5 415 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 KCNJ14Q9UNX9 436 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 TMX2Q9Y320 296 aa8.51□□□□□ -1.05
VPS53-205ENST00000541903 KIF28PB7ZC32 967 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 ADM5C9JUS6 153 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 CYTH3O43739 400 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 TRAK2O60296 914 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 BMP3P12645 472 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 NF2P35240 595 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 IKQ13123 557 aaPredicted RBP8.5□□□□□ -1.05
VPS53-205ENST00000541903 SLC35G1Q2M3R5 365 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 EAPPQ56P03 285 aaPredicted RBP8.5□□□□□ -1.05
VPS53-205ENST00000541903 MYSM1Q5VVJ2 828 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 PRAMEF18Q5VWM3 479 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 WWC2Q6AWC2 1192 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 KRT26Q7Z3Y9 468 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 PNMA8AQ86V59 439 aaPredicted RBP8.5□□□□□ -1.05
VPS53-205ENST00000541903 SCYL3Q8IZE3 742 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 ACER1Q8TDN7 264 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 GPKOWQ92917 476 aaPredicted RBP eCLIP8.5□□□□□ -1.05
VPS53-205ENST00000541903 SPATA32Q96LK8 384 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 PIGSQ96S52 555 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 PHF20Q9BVI0 1012 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 UBA5Q9GZZ9 404 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 CPVLQ9H3G5 476 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 TAF1DQ9H5J8 278 aaPredicted RBP8.5□□□□□ -1.05
VPS53-205ENST00000541903 RIOX1Q9H6W3 641 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 VCPKMTQ9H867 229 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 AS3MTQ9HBK9 375 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 GDPD2Q9HCC8 539 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 VAT1LQ9HCJ6 419 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 ZNF112Q9UJU3 913 aa8.5□□□□□ -1.05
VPS53-205ENST00000541903 SSC5DA1L4H1 1573 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 A0A1W2PRG0 241 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 BTBD18B2RXH4 712 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 MBD3O95983 291 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 U2AF2P26368 475 aaKnown RBP eCLIP8.49□□□□□ -1.05
VPS53-205ENST00000541903 INPP5BP32019 993 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 ECE1P42892 770 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 NAPAP54920 295 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 TTBK2Q6IQ55 1244 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 GALNT17Q6IS24 598 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 PPP1R18Q6NYC8 613 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 NOSTRINQ8IVI9 506 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 ADGRF4Q8IZF3 695 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 SPICE1Q8N0Z3 855 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 NUP88Q99567 741 aaPredicted RBP8.49□□□□□ -1.05
VPS53-205ENST00000541903 C6orf50Q9HD87 102 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 LMBRD1Q9NUN5 540 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 BARHL2Q9NY43 387 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.49□□□□□ -1.05
VPS53-205ENST00000541903 TFIP11Q9UBB9 837 aaKnown RBP8.49□□□□□ -1.05
VPS53-205ENST00000541903 NOL7Q9UMY1 257 aaKnown RBP8.49□□□□□ -1.05
VPS53-205ENST00000541903 DDX49Q9Y6V7 483 aaKnown RBP8.49□□□□□ -1.05
VPS53-205ENST00000541903 ELP1O95163 1332 aa8.49□□□□□ -1.05
VPS53-205ENST00000541903 PNMA6FA0A0J9YX94 578 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 GOLGA6L4A6NEF3 574 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 USP17L10C9JJH3 530 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 TMEM232C9JQI7 657 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 STXBP3O00186 592 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 ZBTB5O15062 677 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 PPP1R12BO60237 982 aaPredicted RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 GNA11P29992 359 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms