RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 TCP11L1Q9NUJ3 509 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 HPSEQ9Y251 543 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 FAM237AA0A1B0GTK4 181 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 GOLGA6L6A8MZA4 724 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 PFKFB1P16118 471 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 DRC7Q8IY82 874 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 ERCC4Q92889 916 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-210ENST00000538120 CLIC6Q96NY7 704 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 NAV1Q8NEY1 1877 aa12.33□□□□□ -0.44
CLIP1-210ENST00000538120 DDX60LQ5H9U9 1706 aaKnown RBP12.33□□□□□ -0.44
CLIP1-210ENST00000538120 A0A087WWV3 80 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 ZNF202O95125 648 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 VEGFAP15692 232 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 AKAP17AQ02040 695 aaKnown RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 NAA30Q147X3 362 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 EARS2Q5JPH6 523 aaKnown RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 POTEAQ6S8J7 498 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 C16orf86Q6ZW13 317 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 SLF2Q8IX21 1173 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 CTCFLQ8NI51 663 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 FAM205CA6NFA0 338 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 TPM3P06753 285 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 CDK8P49336 464 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 C11orf57Q6ZUT1 292 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-210ENST00000538120 C2CD5Q86YS7 1000 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 AMOTL1Q8IY63 956 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 ANKRD7Q92527 254 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 TRIM5Q9C035 493 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 KAT14Q9H8E8 782 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 SUGT1Q9Y2Z0 365 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 PCDHB6Q9Y5E3 794 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 CDK5RAP2Q96SN8 1893 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 SNED1Q8TER0 1413 aa12.32□□□□□ -0.44
CLIP1-210ENST00000538120 IQCB1Q15051 598 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 EZH2Q15910 746 aaKnown RBP12.31□□□□□ -0.44
CLIP1-210ENST00000538120 SLC35G1Q2M3R5 365 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 RILPL1Q5EBL4 403 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 RESP18Q5W5W9 173 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 ZNF444Q8N0Y2 327 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-210ENST00000538120 TNFRSF25Q93038 417 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 ZNF622Q969S3 477 aaKnown RBP eCLIP12.31□□□□□ -0.447e-7■□□□□ 9.7
CLIP1-210ENST00000538120 CAMKK2Q96RR4 588 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 CTIFO43310 598 aaKnown RBP12.31□□□□□ -0.44
CLIP1-210ENST00000538120 CUTAO60888 179 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 TSPY3P0CV98 308 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 TSPY8P0CW00 308 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 ZNF165P49910 485 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 CCDC144BQ3MJ40 725 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 TMCO4Q5TGY1 634 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 STAG2Q8N3U4 1231 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 JMYQ8N9B5 988 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 PNMA1Q8ND90 353 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 CABP5Q9NP86 173 aa12.31□□□□□ -0.44
CLIP1-210ENST00000538120 RGPD3A6NKT7 1758 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 RGPD4Q7Z3J3 1758 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 F8W031 263 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 ZNF75DP51815 510 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 GRIN1Q05586 938 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 GRM4Q14833 912 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 SLC15A2Q16348 729 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 STX1AQ16623 288 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 CCDC178Q5BJE1 867 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 NOM1Q5C9Z4 860 aaKnown RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 STYK1Q6J9G0 422 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 PLA2G4DQ86XP0 818 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 CNPY4Q8N129 248 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 FBXW7Q969H0 707 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 TMEM47Q9BQJ4 181 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 SDF4Q9BRK5 362 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 KCNQ5Q9NR82 932 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 MAD2L2Q9UI95 211 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 FBXO2Q9UK22 296 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 ADAMTS3O15072 1205 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 XBP1P17861 261 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 KRT2P35908 639 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 EN1Q05925 392 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 NCBP1Q09161 790 aaKnown RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 PFKFB3Q16875 520 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 TMEM92Q6UXU6 159 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 CACTINQ8WUQ7 758 aaKnown RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 DDX4Q9NQI0 724 aaKnown RBP12.3□□□□□ -0.44
CLIP1-210ENST00000538120 KIAA1468Q9P260 1216 aa12.3□□□□□ -0.44
CLIP1-210ENST00000538120 CAVIN2O95810 425 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 SCG2P13521 617 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 PTPREP23469 700 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 KIF5BP33176 963 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 ARID5BQ14865 1188 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 KRI1Q8N9T8 703 aaKnown RBP12.29□□□□□ -0.44
CLIP1-210ENST00000538120 TIGD1Q96MW7 591 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 EYA3Q99504 573 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 TTF2Q9UNY4 1162 aaKnown RBP12.29□□□□□ -0.44
CLIP1-210ENST00000538120 QSER1Q2KHR3 1735 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 G3V3G9 751 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 WNT7AO00755 349 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 CHRNA5P30532 468 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 SYKP43405 635 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 NOVP48745 357 aa12.29□□□□□ -0.44
CLIP1-210ENST00000538120 UTP14CQ5TAP6 766 aaKnown RBP12.29□□□□□ -0.44
CLIP1-210ENST00000538120 H0YIN7 160 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms