RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 TRIB2Q92519 343 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 NUP88Q99567 741 aaPredicted RBP17.57■□□□□ 0.4
USP28-204ENST00000537642 MOV10L1Q9BXT6 1211 aaKnown RBP17.57■□□□□ 0.4
USP28-204ENST00000537642 SPATC1LQ9H0A9 340 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 CWC22Q9HCG8 908 aaKnown RBP17.57■□□□□ 0.4
USP28-204ENST00000537642 ADAMTS5Q9UNA0 930 aa17.57■□□□□ 0.4
USP28-204ENST00000537642 FGRP09769 529 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 GSPT1P15170 499 aaKnown RBP17.56■□□□□ 0.4
USP28-204ENST00000537642 PTPREP23469 700 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 GJA8P48165 433 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 TTC22Q5TAA0 569 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 WDR78Q5VTH9 848 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 CWC27Q6UX04 472 aaKnown RBP17.56■□□□□ 0.4
USP28-204ENST00000537642 DIAPH3Q9NSV4 1193 aa17.56■□□□□ 0.4
USP28-204ENST00000537642 SLC15A5A6NIM6 579 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 HIP1O00291 1037 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 ORC4O43929 436 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 RGS2P41220 211 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 MFAP1P55081 439 aaKnown RBP17.55■□□□□ 0.4
USP28-204ENST00000537642 MAP2K5Q13163 448 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 LRRC47Q8N1G4 583 aaKnown RBP17.55■□□□□ 0.4
USP28-204ENST00000537642 NKX2-3Q8TAU0 364 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 PAK6Q9NQU5 681 aaPredicted RBP17.55■□□□□ 0.4
USP28-204ENST00000537642 PPP1R9AQ9ULJ8 1098 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 SYNPO2Q9UMS6 1093 aa17.55■□□□□ 0.4
USP28-204ENST00000537642 TSPY2A6NKD2 308 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 ERCC3P19447 782 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 HAND2P61296 217 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 GRB14Q14449 540 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 PLS1Q14651 629 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 TMEM132BQ14DG7 1078 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 CCL14Q16627 93 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 SHCBP1Q8NEM2 672 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 U2AF1L4Q8WU68 220 aaKnown RBP17.54■□□□□ 0.4
USP28-204ENST00000537642 APBA2Q99767 749 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 IL17RBQ9NRM6 502 aa17.54■□□□□ 0.4
USP28-204ENST00000537642 ZNFX1Q9P2E3 1918 aaKnown RBP17.53■□□□□ 0.4
USP28-204ENST00000537642 VWA5AO00534 786 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 RANBP6O60518 1105 aaKnown RBP17.53■□□□□ 0.4
USP28-204ENST00000537642 NMT2O60551 498 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 SGPL1O95470 568 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 ZKSCAN1P17029 563 aaPredicted RBP17.53■□□□□ 0.4
USP28-204ENST00000537642 TRMT44Q8IYL2 757 aaKnown RBP17.53■□□□□ 0.4
USP28-204ENST00000537642 GMCL1P1Q8NEA9 526 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 REPS2Q8NFH8 660 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 DEFB118Q96PH6 123 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 SLF1Q9BQI6 1058 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 NBPF3Q9H094 633 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.53■□□□□ 0.4
USP28-204ENST00000537642 IVNS1ABPQ9Y6Y0 642 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 LAMA4Q16363 1823 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 ZNF236Q9UL36 1845 aa17.53■□□□□ 0.4
USP28-204ENST00000537642 RPTORQ8N122 1335 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 HOXC6P09630 235 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 MAP3K21Q5TCX8 1036 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 SLFN13Q68D06 897 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 NCAPG2Q86XI2 1143 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 TBC1D10CQ8IV04 446 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 IL25Q9H293 177 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 TOMM22Q9NS69 142 aa17.52■□□□□ 0.4
USP28-204ENST00000537642 PRKAR2AP13861 404 aaKnown RBP17.51■□□□□ 0.39
USP28-204ENST00000537642 NOVP48745 357 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 RRP12Q5JTH9 1297 aaKnown RBP17.51■□□□□ 0.39
USP28-204ENST00000537642 PPP4R3BQ5MIZ7 849 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 UBE2Q1Q7Z7E8 422 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 NPLOC4Q8TAT6 608 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 STAG1Q8WVM7 1258 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 MROH8Q9H579 483 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 HMX1Q9NP08 348 aaPredicted RBP17.51■□□□□ 0.39
USP28-204ENST00000537642 FLRT1Q9NZU1 646 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 ZNF214Q9UL59 606 aaPredicted RBP17.51■□□□□ 0.39
USP28-204ENST00000537642 STX8Q9UNK0 236 aa17.51■□□□□ 0.39
USP28-204ENST00000537642 STRNO43815 780 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 SLC25A27O95847 323 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 ADORA2AP29274 412 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 CACNB2Q08289 660 aaPredicted RBP17.5■□□□□ 0.39
USP28-204ENST00000537642 AKNAD1Q5T1N1 836 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 RIOX2Q8IUF8 465 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 PRPF38AQ8NAV1 312 aaKnown RBP17.5■□□□□ 0.39
USP28-204ENST00000537642 DSCC1Q9BVC3 393 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 CRISPLD2Q9H0B8 497 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 FEM1BQ9UK73 627 aa17.5■□□□□ 0.39
USP28-204ENST00000537642 COBLO75128 1261 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 TFRCP02786 760 aaKnown RBP17.49■□□□□ 0.39
USP28-204ENST00000537642 PCP11498 1178 aaKnown RBP17.49■□□□□ 0.39
USP28-204ENST00000537642 BMP3P12645 472 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 STAT3P40763 770 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 MFSD6Q6ZSS7 791 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 ABRAQ8N0Z2 381 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 KIFC2Q96AC6 838 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 GMCL1Q96IK5 515 aa17.49■□□□□ 0.39
USP28-204ENST00000537642 ZNF213O14771 459 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 IGHA2P01877 340 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 MCCP23508 829 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 CCND3P30281 292 aaPredicted RBP17.48■□□□□ 0.39
USP28-204ENST00000537642 RASGRP2Q7LDG7 609 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 DPP9Q86TI2 863 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 CHMP4CQ96CF2 233 aa17.48■□□□□ 0.39
USP28-204ENST00000537642 RNF41Q9H4P4 317 aaPredicted RBP17.48■□□□□ 0.39
USP28-204ENST00000537642 TCP11L1Q9NUJ3 509 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms