RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	LCORL	Q8N3X6	602 aa		13.93	□□□□□ -0.18
CTNND1-238	ENST00000534647	PANK1	Q8TE04	598 aa		13.93	□□□□□ -0.18
CTNND1-238	ENST00000534647	SH2D4A	Q9H788	454 aa		13.93	□□□□□ -0.18
CTNND1-238	ENST00000534647	ADAMTS5	Q9UNA0	930 aa		13.93	□□□□□ -0.18
CTNND1-238	ENST00000534647	ZNF236	Q9UL36	1845 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	GOLIM4	O00461	696 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	SEPT4	O43236	478 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	COBL	O75128	1261 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	IFIT2	P09913	472 aa	Known RBP	13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	ATP5J	P18859	108 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	MDM2	Q00987	491 aa	Predicted RBP	13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	EVX2	Q03828	476 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	C1orf53	Q5VUE5	145 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	SIRT2	Q8IXJ6	389 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	SDR42E1	Q8WUS8	393 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	TANGO6	Q9C0B7	1094 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	VCPKMT	Q9H867	229 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	ARHGEF10L	Q9HCE6	1279 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	ZBTB40	Q9NUA8	1239 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	NRBP1	Q9UHY1	535 aa		13.92	□□□□□ -0.18
CTNND1-238	ENST00000534647	SLC25A27	O95847	323 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	ADD2	P35612	726 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	SNX17	Q15036	470 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	C12orf60	Q5U649	245 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	SLC39A5	Q6ZMH5	540 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	DNAJC2	Q99543	621 aa	Known RBP	13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	PAG1	Q9NWQ8	432 aa		13.91	□□□□□ -0.18
CTNND1-238	ENST00000534647	RLF	Q13129	1914 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	WDR46	O15213	610 aa	Known RBP	13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	PPP1R37	O75864	691 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	FLOT1	O75955	427 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	CYP2D6	P10635	497 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	FCER1A	P12319	257 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	CDK8	P49336	464 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	RTP1	P59025	263 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	ICA1	Q05084	483 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	UBE3C	Q15386	1083 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	GJC2	Q5T442	439 aa	Predicted RBP	13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	C16orf86	Q6ZW13	317 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	SLC44A5	Q8NCS7	719 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	DYNLL2	Q96FJ2	89 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	MAML3	Q96JK9	1138 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	CHMP4B	Q9H444	224 aa	Known RBP	13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	ARMT1	Q9H993	441 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	KANSL2	Q9H9L4	492 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	PRKAG2	Q9UGJ0	569 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	DDX19B	Q9UMR2	479 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	DIS3	Q9Y2L1	958 aa	Known RBP	13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	COL6A3	P12111	3177 aa		13.9	□□□□□ -0.18
CTNND1-238	ENST00000534647	KBTBD13	C9JR72	458 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	PRKAB2	O43741	272 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	AKR1B1	P15121	316 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	ATN1	P54259	1190 aa	Predicted RBP	13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	PDAP1	Q13442	181 aa	Known RBP	13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	AMOTL1	Q8IY63	956 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	ATG4C	Q96DT6	458 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	HAUS7	Q99871	368 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647		A0A0G2JMZ2	1700 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	CUL9	Q8IWT3	2517 aa		13.89	□□□□□ -0.19
CTNND1-238	ENST00000534647	FRMPD3	Q5JV73	1810 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	USP17L12	C9JPN9	530 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	USP17L21	D6R901	530 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	MBD4	O95243	580 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	TMEM132B	Q14DG7	1078 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	LRRC41	Q15345	812 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	NCAPG2	Q86XI2	1143 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	RIOX2	Q8IUF8	465 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	CCDC82	Q8N4S0	544 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	FAM117A	Q9C073	453 aa		13.88	□□□□□ -0.19
CTNND1-238	ENST00000534647	NAV1	Q8NEY1	1877 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	EEF2	P13639	858 aa	Known RBP	13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	COPB2	P35606	906 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	PLS1	Q14651	629 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	ZSCAN25	Q6NSZ9	544 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	CTR9	Q6PD62	1173 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	SPICE1	Q8N0Z3	855 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	DDRGK1	Q96HY6	314 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	BOLA2	Q9H3K6	86 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	PHF24	Q9UPV7	400 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	ATP11B	Q9Y2G3	1177 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647		A0A0C4DFX4	3053 aa		13.87	□□□□□ -0.19
CTNND1-238	ENST00000534647	VWA5A	O00534	786 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	STAT3	P40763	770 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	ADCYAP1R1	P41586	468 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	ZNF792	Q3KQV3	632 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	PRAMEF19	Q5SWL8	479 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	CLEC10A	Q8IUN9	316 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	MSL3	Q8N5Y2	521 aa	Known RBP	13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	GUCD1	Q96NT3	240 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	TINF2	Q9BSI4	451 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	GOPC	Q9HD26	462 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	PPP1R9A	Q9ULJ8	1098 aa		13.86	□□□□□ -0.19
CTNND1-238	ENST00000534647	ROBO3	Q96MS0	1386 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	CYP2D7	A0A087X1C5	515 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647		A6NJR5	290 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	SMIM22	K7EJ46	135 aa		13.85	□□□□□ -0.19
CTNND1-238	ENST00000534647	KCTD2	Q14681	263 aa		13.85	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms