RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, human

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD9-208	ENST00000533643	SNX21	Q969T3	373 aa		13.91	□□□□□ -0.18
COMMD9-208	ENST00000533643	CAPNS2	Q96L46	248 aa		13.91	□□□□□ -0.18
COMMD9-208	ENST00000533643	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.91	□□□□□ -0.18
COMMD9-208	ENST00000533643	MAD2L2	Q9UI95	211 aa		13.91	□□□□□ -0.18
COMMD9-208	ENST00000533643	MYH4	Q9Y623	1939 aa		13.91	□□□□□ -0.18
COMMD9-208	ENST00000533643	CCL15-CCL14	A0A0B4J2E2	113 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	TESPA1	A2RU30	521 aa	Predicted RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	PALM3	A6NDB9	673 aa	Predicted RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	GOLGA8A	A7E2F4	631 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	WDR46	O15213	610 aa	Known RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	PARP1	P09874	1014 aa	Known RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	BMP3	P12645	472 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	HSPA6	P17066	643 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	SLC1A4	P43007	532 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	MCM2	P49736	904 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	METAP2	P50579	478 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	CCT2	P78371	535 aa	Known RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	STK3	Q13188	491 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	CCL15	Q16663	113 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	CCDC96	Q2M329	555 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	FAM83B	Q5T0W9	1011 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	TREML2	Q5T2D2	321 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	GPAT2	Q6NUI2	795 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	KCTD1	Q719H9	257 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	FASTKD5	Q7L8L6	764 aa	Known RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	STAG2	Q8N3U4	1231 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	ZIC5	Q96T25	663 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	NCOA5	Q9HCD5	579 aa	Known RBP	13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	GPCPD1	Q9NPB8	672 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	NID2	Q14112	1375 aa		13.9	□□□□□ -0.18
COMMD9-208	ENST00000533643	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.9	□□□□□ -0.19
COMMD9-208	ENST00000533643	MANSC4	A6NHS7	340 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	GOLGA8H	P0CJ92	632 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	CDC27	P30260	824 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	ADD1	P35611	737 aa	Known RBP	13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	GRM1	Q13255	1194 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	RTN1	Q16799	776 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	ASPRV1	Q53RT3	343 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	TTBK2	Q6IQ55	1244 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	NECAB1	Q8N987	351 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	CTCFL	Q8NI51	663 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	TMX3	Q96JJ7	454 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	PTPN18	Q99952	460 aa		13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	SLK	Q9H2G2	1235 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.89	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L15	C9J2P7	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	BTBD19	C9JJ37	291 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L13	C9JLJ4	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	TMEM232	C9JQI7	657 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L11	C9JVI0	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L18	D6R9N7	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L22	D6RA61	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L17	D6RBQ6	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L19	D6RCP7	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L20	D6RJB6	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	AOC2	O75106	756 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	KIF5B	P33176	963 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	VEGFB	P49765	207 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	KIF23	Q02241	960 aa	Predicted RBP	13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	USP17L24	Q0WX57	530 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	SCRN1	Q12765	414 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	PPP2R5B	Q15173	497 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	SLC35G1	Q2M3R5	365 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	GPATCH4	Q5T3I0	446 aa	Known RBP	13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	BTNL9	Q6UXG8	535 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	CATSPERG	Q6ZRH7	1159 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	TANGO6	Q9C0B7	1094 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	CPVL	Q9H3G5	476 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	FBXO28	Q9NVF7	368 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	FEM1B	Q9UK73	627 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	ISY1	Q9ULR0	285 aa	Known RBP	13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	AGTPBP1	Q9UPW5	1226 aa		13.88	□□□□□ -0.19
COMMD9-208	ENST00000533643	KLRF2	D3W0D1	207 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	PLA2G6	O60733	806 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	PLEKHA8P1	O95397	391 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	HOXA7	P31268	230 aa	Predicted RBP	13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	SLC16A2	P36021	539 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	GNAQ	P50148	359 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	ST3GAL1	Q11201	340 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	NOG	Q13253	232 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	TMTC3	Q6ZXV5	915 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	ANKRD23	Q86SG2	305 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	NBPF11	Q86T75	865 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	SRBD1	Q8N5C6	995 aa	Known RBP	13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	CHURC1	Q8WUH1	139 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	GTF3C6	Q969F1	213 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	UBA5	Q9GZZ9	404 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	RBM28	Q9NW13	759 aa	Known RBP	13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	PTPRF	P10586	1907 aa		13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	WDR33	Q9C0J8	1336 aa	Known RBP	13.87	□□□□□ -0.19
COMMD9-208	ENST00000533643	LOC285556	D6RIA3	1793 aa		13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	CCDC196	A0A1B0GTZ2	297 aa		13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643		K7ELQ4	463 aa	Predicted RBP	13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	TM4SF4	P48230	202 aa		13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	INHBE	P58166	350 aa		13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	FUT2	Q10981	343 aa		13.86	□□□□□ -0.19
COMMD9-208	ENST00000533643	NTRK3	Q16288	839 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms