RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 LDLRAD1Q5T700 205 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 FAM184AQ8NB25 1140 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 NSUN7Q8NE18 718 aaKnown RBP16.52■□□□□ 0.23
TRIM3-212ENST00000533064 SLC10A4Q96EP9 437 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 GMCL1Q96IK5 515 aa16.52■□□□□ 0.23
TRIM3-212ENST00000533064 FAM217BQ9NTX9 383 aaPredicted RBP16.52■□□□□ 0.23
TRIM3-212ENST00000533064 PTPDC1A2A3K4 754 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 PALM3A6NDB9 673 aaPredicted RBP16.51■□□□□ 0.23
TRIM3-212ENST00000533064 TRIM75PA6NK02 468 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 C19orf81C9J6K1 198 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 KLRF2D3W0D1 207 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 NDUFB10O96000 172 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 GOLGA8HP0CJ92 632 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 GJB2P29033 226 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 BACE1P56817 501 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 SSRP1Q08945 709 aaKnown RBP16.51■□□□□ 0.23
TRIM3-212ENST00000533064 ZNF543Q08ER8 600 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 MTMR2Q13614 643 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 TMTC3Q6ZXV5 915 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 STAG2Q8N3U4 1231 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 LPAR1Q92633 364 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 CLMNQ96JQ2 1002 aa16.51■□□□□ 0.23
TRIM3-212ENST00000533064 FRMPD2Q68DX3 1309 aaPredicted RBP16.51■□□□□ 0.23
TRIM3-212ENST00000533064 PLEKHA8P1O95397 391 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 BMP3P12645 472 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 NTRK3Q16288 839 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 SPICE1Q8N0Z3 855 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 CCDC82Q8N4S0 544 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 ZNF784Q8NCA9 323 aaPredicted RBP16.5■□□□□ 0.23
TRIM3-212ENST00000533064 SMARCC2Q8TAQ2 1214 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 DDX11Q96FC9 970 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 OTUD5Q96G74 571 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 AFG3L2Q9Y4W6 797 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 COL11A1P12107 1806 aaPredicted RBP16.5■□□□□ 0.23
TRIM3-212ENST00000533064 SPDYE5A6NIY4 337 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 JAK2O60674 1132 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 CTDNEP1O95476 244 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 IKQ13123 557 aaPredicted RBP16.5■□□□□ 0.23
TRIM3-212ENST00000533064 NFKBIBQ15653 356 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 KCTD1Q719H9 257 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 RASGRP2Q7LDG7 609 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 PHKBQ93100 1093 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 SLC26A6Q9BXS9 759 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 GPCPD1Q9NPB8 672 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 TMOD4Q9NZQ9 345 aa16.5■□□□□ 0.23
TRIM3-212ENST00000533064 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
TRIM3-212ENST00000533064 ORC3Q9UBD5 711 aaPredicted RBP16.5■□□□□ 0.23
TRIM3-212ENST00000533064 PASKQ96RG2 1323 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 WDR46O15213 610 aaKnown RBP16.49■□□□□ 0.23
TRIM3-212ENST00000533064 SMARCA1P28370 1054 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 PPIL2Q13356 520 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 CST9Q5W186 159 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 CMTR1Q8N1G2 835 aaKnown RBP16.49■□□□□ 0.23
TRIM3-212ENST00000533064 SRBD1Q8N5C6 995 aaKnown RBP16.49■□□□□ 0.23
TRIM3-212ENST00000533064 WASF1Q92558 559 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 OPTNQ96CV9 577 aa16.49■□□□□ 0.23
TRIM3-212ENST00000533064 RNF26Q9BY78 433 aaPredicted RBP16.49■□□□□ 0.23
TRIM3-212ENST00000533064 SMCHD1A6NHR9 2005 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 CNTNAP5Q8WYK1 1306 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 STK36Q9NRP7 1315 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 FMNL1O95466 1100 aaPredicted RBP16.48■□□□□ 0.23
TRIM3-212ENST00000533064 PDCP20941 246 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 HMGCS2P54868 508 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 FSTL1Q12841 308 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 FAM83BQ5T0W9 1011 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 SPZ1Q9BXG8 430 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 TCHHQ07283 1943 aa16.48■□□□□ 0.23
TRIM3-212ENST00000533064 TMEM232C9JQI7 657 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 CXCL11O14625 94 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 PPFIA3O75145 1194 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 DEXIO95424 95 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 STAT2P52630 851 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 HUNKP57058 714 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 NUCB2P80303 420 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 NBR1Q14596 966 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 CHURC1Q8WUH1 139 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 NUP88Q99567 741 aaPredicted RBP16.47■□□□□ 0.23
TRIM3-212ENST00000533064 RLFQ13129 1914 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 MYH15Q9Y2K3 1946 aa16.47■□□□□ 0.23
TRIM3-212ENST00000533064 IRF6O14896 467 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 PRPF3O43395 683 aaKnown RBP16.46■□□□□ 0.23
TRIM3-212ENST00000533064 NBPF11Q86T75 865 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 CNKSR2Q8WXI2 1034 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 RRP36Q96EU6 259 aaKnown RBP16.46■□□□□ 0.23
TRIM3-212ENST00000533064 C12orf42Q96LP6 360 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 UBA5Q9GZZ9 404 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 EMILIN3Q9NT22 766 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 SEC63Q9UGP8 760 aaKnown RBP16.46■□□□□ 0.23
TRIM3-212ENST00000533064 DTNBO60941 627 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 PDIA4P13667 645 aaKnown RBP16.46■□□□□ 0.23
TRIM3-212ENST00000533064 VCAM1P19320 739 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 FUT2Q10981 343 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 SH3D19Q5HYK7 790 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 KIAA1755Q5JYT7 1200 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 LARP1BQ659C4 914 aaKnown RBP16.46■□□□□ 0.23
TRIM3-212ENST00000533064 TTBK2Q6IQ55 1244 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 FAM160B2Q86V87 743 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 TANGO6Q9C0B7 1094 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 VAT1LQ9HCJ6 419 aa16.46■□□□□ 0.23
TRIM3-212ENST00000533064 FEM1BQ9UK73 627 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms