RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ARMCX6Q7L4S7 300 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 DYMQ7RTS9 669 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 LRRC47Q8N1G4 583 aaKnown RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 SYNPOQ8N3V7 929 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 POU5F2Q8N7G0 328 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 KCT2Q8NC54 265 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 DNAJB8Q8NHS0 232 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 ZCRB1Q8TBF4 217 aaKnown RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 XAGE3Q8WTP9 111 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 SMARCC1Q92922 1105 aaPredicted RBP4.27□□□□□ -1.73
CD44-234ENST00000531873 VWCEQ96DN2 955 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 SGSM3Q96HU1 749 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 DHRS1Q96LJ7 313 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 LGR4Q9BXB1 951 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 FOXQ1Q9C009 403 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 PLAAQ9Y263 795 aa4.27□□□□□ -1.73
CD44-234ENST00000531873 ANKRD34BA5PLL1 514 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 IQCA1LA6NCM1 817 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 WNT11O96014 354 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 POU3F3P20264 500 aaPredicted RBP4.26□□□□□ -1.73
CD44-234ENST00000531873 L1CAMP32004 1257 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 GBP1P32455 592 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 GRIK1P39086 918 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 ASPAP45381 313 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 C21orf62-AS1Q17RA5 79 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 TM4SF20Q53R12 229 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 ANKRD34AQ69YU3 496 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 OGFOD2Q6N063 350 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 ZNF227Q86WZ6 799 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 THNSL2Q86YJ6 484 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 SMYD4Q8IYR2 804 aaPredicted RBP4.26□□□□□ -1.73
CD44-234ENST00000531873 STAG1Q8WVM7 1258 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 SLC26A8Q96RN1 970 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 FAM126AQ9BYI3 521 aaPredicted RBP4.26□□□□□ -1.73
CD44-234ENST00000531873 KRTAP17-1Q9BYP8 105 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.26□□□□□ -1.73
CD44-234ENST00000531873 ACSS3Q9H6R3 686 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 PIDD1Q9HB75 910 aa4.26□□□□□ -1.73
CD44-234ENST00000531873 NCOA5Q9HCD5 579 aaKnown RBP4.26□□□□□ -1.73
CD44-234ENST00000531873 PRR19A6NJB7 356 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 RNGTTO60942 597 aaKnown RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 LRIG2O94898 1065 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 ALX3O95076 343 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 ITGAVP06756 1048 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 C8AP07357 584 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 IBSPP21815 317 aaPredicted RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 GRIA2P42262 883 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 PPP2R2AP63151 447 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 PABPC4Q13310 644 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-234ENST00000531873 SV2CQ496J9 727 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 ZC3H12BQ5HYM0 836 aaKnown RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 FAM209AQ5JX71 171 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 NBPF12Q5TAG4 269 aaPredicted RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 HEATR6Q6AI08 1181 aaKnown RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 FDX2Q6P4F2 183 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 CDC37L1Q7L3B6 337 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 C12orf50Q8NA57 414 aaPredicted RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 NINJ1Q92982 152 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 MFSD3Q96ES6 412 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 FGD4Q96M96 766 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 TMX1Q9H3N1 280 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 SEMA6CQ9H3T2 930 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 KLHL42Q9P2K6 505 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 STOML1Q9UBI4 398 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 MRPS23Q9Y3D9 190 aaKnown RBP4.25□□□□□ -1.73
CD44-234ENST00000531873 ZNF451Q9Y4E5 1061 aa4.25□□□□□ -1.73
CD44-234ENST00000531873 A0A087X0B3 334 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 IRS4O14654 1257 aaPredicted RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 DYNC1LI2O43237 492 aaPredicted RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 KCNQ2O43526 872 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 NAT2P11245 290 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 RAB6AP20340 208 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 ANAPC15P60006 121 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 NFIAQ12857 509 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 CDPF1Q6NVV7 123 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 KRT26Q7Z3Y9 468 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.24□□□□□ -1.73
CD44-234ENST00000531873 DHX37Q8IY37 1157 aaKnown RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 NIM1KQ8IY84 436 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 CCDC144CPQ8IYA2 1237 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 MFSD2AQ8NA29 543 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 RIN3Q8TB24 985 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 KREMEN1Q96MU8 473 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 CLUHP3Q96NS8 147 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 AARSD1Q9BTE6 412 aaKnown RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 DHRS4Q9BTZ2 278 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 MKRN2Q9H000 416 aaKnown RBP4.24□□□□□ -1.73
CD44-234ENST00000531873 PCOLCE2Q9UKZ9 415 aa4.24□□□□□ -1.73
CD44-234ENST00000531873 TRBV23-1A0A0A0MS06 115 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 TRAV20A0A0B4J274 112 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 CCDC163A0A0D9SF12 145 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 FAM83GA6ND36 823 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 AGRPO00253 132 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 PLD2O14939 933 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 RFPL3O75679 317 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 SLITRK5O94991 958 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 RAPGEF3O95398 923 aa4.23□□□□□ -1.73
CD44-234ENST00000531873 C6orf222P0C671 652 aaPredicted RBP4.23□□□□□ -1.73
CD44-234ENST00000531873 FGFR1P11362 822 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms