RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GINM1Q9NU53 330 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 TMEM39AQ9NV64 488 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 BTBD7Q9P203 1132 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 PCDHGA10Q9Y5H3 936 aa10.19□□□□□ -0.78
CD44-232ENST00000531118 A0A1W2PQ45 241 aaPredicted RBP10.18□□□□□ -0.78
CD44-232ENST00000531118 A0A1W2PQY0 241 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 FAM86C2PA6NEL3 165 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L15C9J2P7 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L13C9JLJ4 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L11C9JVI0 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L18D6R9N7 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L22D6RA61 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L17D6RBQ6 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L19D6RCP7 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L20D6RJB6 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 CIAO1O76071 339 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 ADORA2AP29274 412 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 USP17L24Q0WX57 530 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 RAB30Q15771 203 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 ZYXQ15942 572 aaKnown RBP10.18□□□□□ -0.78
CD44-232ENST00000531118 ERICH6Q7L0X2 663 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 MICALL1Q8N3F8 863 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 ZDHHC16Q969W1 377 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 FEZ1Q99689 392 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 NKX2-4Q9H2Z4 354 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 NAV1Q8NEY1 1877 aa10.18□□□□□ -0.78
CD44-232ENST00000531118 ZNF318Q5VUA4 2279 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 FAM205CA6NFA0 338 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 VCAM1P19320 739 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 PPIGQ13427 754 aaKnown RBP eCLIP10.17□□□□□ -0.78
CD44-232ENST00000531118 AAK1Q2M2I8 961 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 VARS2Q5ST30 1063 aaKnown RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 TMEM240Q5SV17 173 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 PSRC1Q6PGN9 363 aaPredicted RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 CCDC174Q6PII3 467 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 SLC44A5Q8NCS7 719 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 SH3RF3Q8TEJ3 882 aaPredicted RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 NSUN4Q96CB9 384 aaKnown RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 DHX36Q9H2U1 1008 aaKnown RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 PRKRIP1Q9H875 184 aaPredicted RBP10.17□□□□□ -0.78
CD44-232ENST00000531118 XPNPEP3Q9NQH7 507 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 CEP126Q9P2H0 1117 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 PI4KBQ9UBF8 816 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 TBX21Q9UL17 535 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 MYH8P13535 1937 aa10.17□□□□□ -0.78
CD44-232ENST00000531118 FLT1P17948 1338 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 TRANK1O15050 2925 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 ERC2O15083 957 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 GPR37L1O60883 481 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 RARBP10826 455 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 GSTO1P78417 241 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 FAAP100Q0VG06 881 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 CATSPERGQ6ZRH7 1159 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 ANKRD33Q7Z3H0 272 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 DPP9Q86TI2 863 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 METTL16Q86W50 562 aaKnown RBP10.16□□□□□ -0.78
CD44-232ENST00000531118 TRIM34Q9BYJ4 488 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 MSRAQ9UJ68 235 aa10.16□□□□□ -0.78
CD44-232ENST00000531118 YBX2Q9Y2T7 364 aaKnown RBP10.16□□□□□ -0.78
CD44-232ENST00000531118 MCM3APO60318 1980 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 COBLO75128 1261 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 PGK1P00558 417 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 TIMP1P01033 207 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 GH2P01242 217 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 LDHCP07864 332 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 MRE11P49959 708 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 DDX10Q13206 875 aaKnown RBP10.15□□□□□ -0.78
CD44-232ENST00000531118 PRAMEF19Q5SWL8 479 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 MFSD5Q6N075 450 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 PI16Q6UXB8 463 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 C16orf59Q7L2K0 433 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 RNF180Q86T96 592 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 MAPKAPK5Q8IW41 473 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 CRACR2BQ8N4Y2 399 aaPredicted RBP10.15□□□□□ -0.78
CD44-232ENST00000531118 LENG1Q96BZ8 264 aaPredicted RBP10.15□□□□□ -0.78
CD44-232ENST00000531118 TOX2Q96NM4 488 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 HS3ST6Q96QI5 342 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 MOV10L1Q9BXT6 1211 aaKnown RBP10.15□□□□□ -0.78
CD44-232ENST00000531118 STARD7Q9NQZ5 370 aa10.15□□□□□ -0.78
CD44-232ENST00000531118 ZDBF2Q9HCK1 2354 aa10.15□□□□□ -0.79
CD44-232ENST00000531118 DCDC2CA8MYV0 355 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 APBB1O00213 710 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 ADAMTS4O75173 837 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 CSF2RAP15509 400 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 IL15P40933 162 aaPredicted RBP10.14□□□□□ -0.79
CD44-232ENST00000531118 USP14P54578 494 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 SKIV2LQ15477 1246 aaKnown RBP10.14□□□□□ -0.79
CD44-232ENST00000531118 SHCBP1Q8NEM2 672 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 MAML3Q96JK9 1138 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 USP44Q9H0E7 712 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 RPAP3Q9H6T3 665 aaPredicted RBP10.14□□□□□ -0.79
CD44-232ENST00000531118 SLC28A3Q9HAS3 691 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 RAI14Q9P0K7 980 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 NRBP1Q9UHY1 535 aa10.14□□□□□ -0.79
CD44-232ENST00000531118 ZNF521Q96K83 1311 aa10.13□□□□□ -0.79
CD44-232ENST00000531118 ACRP10323 421 aa10.13□□□□□ -0.79
CD44-232ENST00000531118 ERCC3P19447 782 aa10.13□□□□□ -0.79
CD44-232ENST00000531118 MVPQ14764 893 aaKnown RBP10.13□□□□□ -0.79
CD44-232ENST00000531118 PPP2R2DQ66LE6 453 aa10.13□□□□□ -0.79
CD44-232ENST00000531118 ZNF365Q70YC5 407 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms