RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CRELD2Q6UXH1 353 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 BZW1Q7L1Q6 419 aaKnown RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 RNF168Q8IYW5 571 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 SVOPQ8N4V2 548 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 SAMD3Q8N6K7 520 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 TEX9Q8N6V9 391 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 SMCR8Q8TEV9 937 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 P3H4Q92791 437 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 NLRP3Q96P20 1036 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 MOV10L1Q9BXT6 1211 aaKnown RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 PPP1R12CQ9BZL4 782 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 SCAND2PQ9GZW5 306 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 DNAJC25Q9H1X3 360 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ALG2Q9H553 416 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 EBF2Q9HAK2 575 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ABCB6Q9NP58 842 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 CUEDC1Q9NWM3 386 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 TMOD4Q9NZQ9 345 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ABCF2Q9UG63 623 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 ITGB1BP2Q9UKP3 347 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 MTMR7Q9Y216 660 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.54□□□□□ -1.36
CD44-225ENST00000527326 PCDHB11Q9Y5F2 797 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 GMEB1Q9Y692 573 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 SHPRHQ149N8 1683 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 KIF24Q5T7B8 1368 aa6.54□□□□□ -1.36
CD44-225ENST00000527326 GOLGA6L4A6NEF3 574 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 GOLGA8KD6RF30 607 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 IPO5O00410 1097 aaKnown RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 MGRN1O60291 552 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 SKAP2O75563 359 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 DESP17661 470 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 NAT1P18440 290 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 SLC4A8Q2Y0W8 1093 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 FOXD4L6Q3SYB3 417 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 CCDC92Q53HC0 331 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 THEMIS2Q5TEJ8 643 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 MFSD4BQ5TF39 518 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 SFMBT2Q5VUG0 894 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 NUTM2GQ5VZR2 741 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 ZNF385CQ66K41 422 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 ZNF280DQ6N043 979 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 PRPF40BQ6NWY9 871 aaKnown RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 FOXD4L3Q6VB84 417 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 CCDC13Q8IYE1 715 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 CEP57L1Q8IYX8 460 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 AFAP1Q8N556 730 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 IGSF22Q8N9C0 903 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 SMARCC2Q8TAQ2 1214 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 WHAMMQ8TF30 809 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 CUL5Q93034 780 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 ACSBG1Q96GR2 724 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 JAKMIP1Q96N16 626 aaKnown RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 FMNL2Q96PY5 1086 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 POLR3CQ9BUI4 534 aaPredicted RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 LRRCC1Q9C099 1032 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 CENPHQ9H3R5 247 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 ANKZF1Q9H8Y5 726 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 DNAAF2Q9NVR5 837 aaKnown RBP6.53□□□□□ -1.36
CD44-225ENST00000527326 ANO10Q9NW15 660 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 SWAP70Q9UH65 585 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 USP16Q9Y5T5 823 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 ARHGEF40Q8TER5 1519 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 MADDQ8WXG6 1647 aa6.53□□□□□ -1.36
CD44-225ENST00000527326 TTC21AQ8NDW8 1320 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 MYOM1P52179 1685 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 RIMS1Q86UR5 1692 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 FER1L4A9Z1Z3 1794 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 PALM3A6NDB9 673 aaPredicted RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 RASSF10A6NK89 507 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 B4DLN1 442 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 NDUFAB1O14561 156 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 ARHGAP6O43182 974 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 BUB1BO60566 1050 aaPredicted RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 CUTAO60888 179 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 SYF2O95926 243 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 PENKP01210 267 aaPredicted RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 SLURP2P0DP57 97 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 GNAT1P11488 350 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 RPL13P26373 211 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 CNGA1P29973 690 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 HSPA4P34932 840 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 GPC1P35052 558 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 SCTRP47872 440 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 PSMD7P51665 324 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 GNGT1P63211 74 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 KCNMA1Q12791 1236 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 POU4F2Q12837 409 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 PABPC4Q13310 644 aaKnown RBP eCLIP6.52□□□□□ -1.37
CD44-225ENST00000527326 PRPF4BQ13523 1007 aaKnown RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 BLMHQ13867 455 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 TAF7Q15545 349 aaPredicted RBP6.52□□□□□ -1.37
CD44-225ENST00000527326 TSNAXIP1Q2TAA8 658 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 Q4G0T1 1027 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 SLC27A3Q5K4L6 730 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 ARMC3Q5W041 872 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 ARMCX5Q6P1M9 558 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 RIPOR1Q6ZS17 1223 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 LCA5Q86VQ0 697 aa6.52□□□□□ -1.37
CD44-225ENST00000527326 CKAP2LQ8IYA6 745 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms