RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ALPK1	Q96QP1	1244 aa		7.62	□□□□□ -1.19
CD44-223	ENST00000526553	PRDM14	Q9GZV8	571 aa		7.62	□□□□□ -1.19
CD44-223	ENST00000526553	PHAX	Q9H814	394 aa	Known RBP	7.62	□□□□□ -1.19
CD44-223	ENST00000526553	ZNF214	Q9UL59	606 aa	Predicted RBP	7.62	□□□□□ -1.19
CD44-223	ENST00000526553	LTBP3	Q9NS15	1303 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	FGR	P09769	529 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	TAL1	P17542	331 aa	Predicted RBP	7.61	□□□□□ -1.19
CD44-223	ENST00000526553	LTK	P29376	864 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	ARID5A	Q03989	594 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	EGR3	Q06889	387 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	ATG4D	Q86TL0	474 aa	Predicted RBP	7.61	□□□□□ -1.19
CD44-223	ENST00000526553	CCDC144CP	Q8IYA2	1237 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	C7orf61	Q8IZ16	206 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	ZNF655	Q8N720	491 aa	Predicted RBP	7.61	□□□□□ -1.19
CD44-223	ENST00000526553	FAM169B	Q8N8A8	192 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	FLAD1	Q8NFF5	587 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	PCDHA11	Q9Y5I1	949 aa		7.61	□□□□□ -1.19
CD44-223	ENST00000526553	BIN1	O00499	593 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	SHOX	O15266	292 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	PRAMEF1	O95521	474 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	SSB	P05455	408 aa	Known RBP eCLIP	7.6	□□□□□ -1.19
CD44-223	ENST00000526553	JUNB	P17275	347 aa	Predicted RBP	7.6	□□□□□ -1.19
CD44-223	ENST00000526553	ZC3H6	P61129	1189 aa	Known RBP	7.6	□□□□□ -1.19
CD44-223	ENST00000526553	ANKRD39	Q53RE8	183 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	TDRD10	Q5VZ19	366 aa	Known RBP	7.6	□□□□□ -1.19
CD44-223	ENST00000526553	ANAPC16	Q96DE5	110 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	GML	Q99445	158 aa		7.6	□□□□□ -1.19
CD44-223	ENST00000526553	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	7.6	□□□□□ -1.19
CD44-223	ENST00000526553	GDNF	P39905	211 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	TCTN2	Q96GX1	697 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	CHST7	Q9NS84	486 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	GFOD1	Q9NXC2	390 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	SLAMF8	Q9P0V8	285 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	TMEM59L	Q9UK28	342 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	FBXL21	Q9UKT6	434 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	CTNND2	Q9UQB3	1225 aa		7.59	□□□□□ -1.19
CD44-223	ENST00000526553	TEK	Q02763	1124 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	TNNI3K	Q59H18	835 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	AXDND1	Q5T1B0	1012 aa	Predicted RBP	7.58	□□□□□ -1.2
CD44-223	ENST00000526553	DCAF15	Q66K64	600 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	RNF111	Q6ZNA4	994 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	MCF2L2	Q86YR7	1114 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	C19orf73	Q9NVV2	129 aa		7.58	□□□□□ -1.2
CD44-223	ENST00000526553	DNAJC25-GNG10	A0A024R161	153 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	PAPLN	O95428	1278 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	DNAJA1	P31689	397 aa	Known RBP	7.57	□□□□□ -1.2
CD44-223	ENST00000526553	PPP2R5E	Q16537	467 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	RALGPS1	Q5JS13	557 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	USHBP1	Q8N6Y0	703 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	LINC00116	Q8NCU8	138 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	ZNF281	Q9Y2X9	895 aa		7.57	□□□□□ -1.2
CD44-223	ENST00000526553	TP53	P04637	393 aa	Predicted RBP	7.56	□□□□□ -1.2
CD44-223	ENST00000526553	PCBP3	P57721	371 aa	Known RBP	7.56	□□□□□ -1.2
CD44-223	ENST00000526553	SLC7A5	Q01650	507 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	GNPTAB	Q3T906	1256 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	C8orf37	Q96NL8	207 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	GP6	Q9HCN6	339 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	PRKAG3	Q9UGI9	489 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	MRVI1	Q9Y6F6	885 aa		7.56	□□□□□ -1.2
CD44-223	ENST00000526553	SMAD7	O15105	426 aa	Known RBP	7.55	□□□□□ -1.2
CD44-223	ENST00000526553	CBFA2T2	O43439	604 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	ITGA4	P13612	1032 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	CD247	P20963	164 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	BMP8B	P34820	402 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	AFM	P43652	599 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	NAALADL2	Q58DX5	795 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	KLHL6	Q8WZ60	621 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	DHX38	Q92620	1227 aa	Known RBP	7.55	□□□□□ -1.2
CD44-223	ENST00000526553	SYTL4	Q96C24	671 aa	Predicted RBP	7.55	□□□□□ -1.2
CD44-223	ENST00000526553	HAUS7	Q99871	368 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	ADAMTS10	Q9H324	1103 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	FAM86C1	Q9NVL1	165 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	TCFL5	Q9UL49	500 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553	FHOD1	Q9Y613	1164 aa		7.55	□□□□□ -1.2
CD44-223	ENST00000526553		A0A087WZG4	1122 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	GSN	P06396	782 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	SYP	P08247	313 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ZGLP1	P0C6A0	271 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ENDOU	P21128	410 aa	Known RBP	7.54	□□□□□ -1.2
CD44-223	ENST00000526553	CTSK	P43235	329 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ZNF445	P59923	1031 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	DUSP4	Q13115	394 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	TCEAL1	Q15170	157 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	VHLL	Q6RSH7	139 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ASIC4	Q96FT7	647 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	DSCC1	Q9BVC3	393 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	FOXP3	Q9BZS1	431 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	KLHL25	Q9H0H3	589 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ZNF408	Q9H9D4	720 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ACTR10	Q9NZ32	417 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	PCDHB10	Q9UN67	800 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	MINPP1	Q9UNW1	487 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	ZNF451	Q9Y4E5	1061 aa		7.54	□□□□□ -1.2
CD44-223	ENST00000526553	SSU72P8	A0A1W2PR75	194 aa		7.53	□□□□□ -1.2
CD44-223	ENST00000526553	ZNF205	O95201	554 aa		7.53	□□□□□ -1.2
CD44-223	ENST00000526553	HPX	P02790	462 aa		7.53	□□□□□ -1.2
CD44-223	ENST00000526553	ETFB	P38117	255 aa		7.53	□□□□□ -1.2
CD44-223	ENST00000526553	NOL9	Q5SY16	702 aa	Known RBP	7.53	□□□□□ -1.2
CD44-223	ENST00000526553	PDZD8	Q8NEN9	1154 aa		7.53	□□□□□ -1.2
CD44-223	ENST00000526553	GBP3	Q9H0R5	595 aa		7.53	□□□□□ -1.2

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