RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	HEATR3	Q7Z4Q2	680 aa		12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	FAM177A1	Q8N128	213 aa	Predicted RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	SRBD1	Q8N5C6	995 aa	Known RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	TTLL6	Q8N841	843 aa		12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	ZNF579	Q8NAF0	562 aa	Known RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	SLC44A5	Q8NCS7	719 aa		12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	ANKS1A	Q92625	1134 aa		12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	RRP36	Q96EU6	259 aa	Known RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.3	□□□□□ -0.44
SPIDR-222	ENST00000524006	USP17L3	A6NCW0	530 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	USP17L4	A6NCW7	530 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	NFKBIE	O00221	500 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	BIN1	O00499	593 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	WDHD1	O75717	1129 aa	Predicted RBP	12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	LMNB1	P20700	586 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	CDC25B	P30305	580 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	RBM5	P52756	815 aa	Known RBP eCLIP	12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	DHX8	Q14562	1220 aa	Known RBP	12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	PKN1	Q16512	942 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	GALNT17	Q6IS24	598 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	SHC4	Q6S5L8	630 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	KRBA2	Q6ZNG9	492 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	USP17L1	Q7RTZ2	530 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	NEDD1	Q8NHV4	660 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	OXER1	Q8TDS5	423 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	CLIC6	Q96NY7	704 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	USP40	Q9NVE5	1235 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	CLIP2	Q9UDT6	1046 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	MKRN1	Q9UHC7	482 aa	Known RBP	12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	FBXO2	Q9UK22	296 aa	Predicted RBP	12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	PCDHB6	Q9Y5E3	794 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	MYO3B	Q8WXR4	1341 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	PLIN4	Q96Q06	1357 aa		12.29	□□□□□ -0.44
SPIDR-222	ENST00000524006	SIPA1L1	O43166	1804 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	GLTPD2	A6NH11	291 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	ZNF500	O60304	480 aa	Predicted RBP	12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	PTPRE	P23469	700 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	SCNN1D	P51172	638 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	NAPA	P54920	295 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	EVX2	Q03828	476 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	FUT2	Q10981	343 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	CC2D2B	Q6DHV5	1058 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	RCSD1	Q6JBY9	416 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	PIK3AP1	Q6ZUJ8	805 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	PODN	Q7Z5L7	613 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	BLID	Q8IZY5	108 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	SMC1B	Q8NDV3	1235 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	RASSF8	Q8NHQ8	419 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	SMARCE1	Q969G3	411 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	TMEM47	Q9BQJ4	181 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	BPIFA3	Q9BQP9	254 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	PCDHA4	Q9UN74	947 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	HPSE	Q9Y251	543 aa		12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	SRPRB	Q9Y5M8	271 aa	Known RBP	12.28	□□□□□ -0.44
SPIDR-222	ENST00000524006	FAM237A	A0A1B0GTK4	181 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	MPHOSPH10	O00566	681 aa	Known RBP	12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	CBFA2T2	O43439	604 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	TOB1	P50616	345 aa	Predicted RBP	12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	PLCD1	P51178	756 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	RHBDL3	P58872	404 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	ASPRV1	Q53RT3	343 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	SARM1	Q6SZW1	724 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	HHIPL2	Q6UWX4	724 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	SPZ1	Q9BXG8	430 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	DBNDD1	Q9H9R9	158 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	C6orf50	Q9HD87	102 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	IL17RB	Q9NRM6	502 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	TMOD2	Q9NZR1	351 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	SERPINB13	Q9UIV8	391 aa		12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	MORC2	Q9Y6X9	1032 aa	Predicted RBP	12.27	□□□□□ -0.45
SPIDR-222	ENST00000524006	ATAD5	Q96QE3	1844 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	POTEC	B2RU33	542 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	KLRF2	D3W0D1	207 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	hCG_1984214	I3L0E3	225 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	POLR2D	O15514	142 aa	Known RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	ECE2	O60344	883 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	GNA11	P29992	359 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	CRK	P46108	304 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	FKBP1A	P62942	108 aa	Known RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	PNOC	Q13519	176 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	POSTN	Q15063	836 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	ZNF174	Q15697	407 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	CCDC96	Q2M329	555 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	DPCR1	Q3MIW9	517 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	COL13A1	Q5TAT6	717 aa	Predicted RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	KRT25	Q7Z3Z0	450 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	PLA2G4D	Q86XP0	818 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	ZNF713	Q8N859	430 aa	Predicted RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	ERCC4	Q92889	916 aa	Predicted RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	MRFAP1L1	Q96HT8	127 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	OSBPL5	Q9H0X9	879 aa	Predicted RBP	12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	MYH7B	A7E2Y1	1941 aa		12.26	□□□□□ -0.45
SPIDR-222	ENST00000524006	MYO1B	O43795	1136 aa		12.25	□□□□□ -0.45
SPIDR-222	ENST00000524006	NEMF	O60524	1076 aa		12.25	□□□□□ -0.45
SPIDR-222	ENST00000524006	VEGFA	P15692	232 aa	Predicted RBP	12.25	□□□□□ -0.45
SPIDR-222	ENST00000524006	MCM7	P33993	719 aa		12.25	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms