RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 BCL2L12Q9HB09 334 aa11.46□□□□□ -0.57
MCF2-209ENST00000520602 C5P01031 1676 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 AKR1B15C9JRZ8 316 aaPredicted RBP11.46□□□□□ -0.58
MCF2-209ENST00000520602 CDC25BP30305 580 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 SLC1A4P43007 532 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 EVX2Q03828 476 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 TROAPQ12815 778 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 PAK1Q13153 545 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 SPECC1LQ69YQ0 1117 aa11.46□□□□□ -0.58
MCF2-209ENST00000520602 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.46□□□□□ -0.58
MCF2-209ENST00000520602 FBXO2Q9UK22 296 aaPredicted RBP11.46□□□□□ -0.58
MCF2-209ENST00000520602 ORC4O43929 436 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 SLC16A2P36021 539 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 PTPAQ15257 358 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 RBM43Q6ZSC3 357 aaKnown RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 DYMQ7RTS9 669 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 CABP7Q86V35 215 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 NELFBQ8WX92 580 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 COA7Q96BR5 231 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 ADCY7P51828 1080 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 PFKFB3Q16875 520 aaPredicted RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 C2CD5Q86YS7 1000 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 PAGE5Q96GU1 130 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 LRWD1Q9UFC0 647 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 PHRF1Q9P1Y6 1649 aaKnown RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 MARF1Q9Y4F3 1742 aaKnown RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 SLU7O95391 586 aaKnown RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 PDE6BP35913 854 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 MRPL12P52815 198 aaKnown RBP11.45□□□□□ -0.58
MCF2-209ENST00000520602 TXNRD1Q16881 649 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 OGFOD1Q8N543 542 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 DESI2Q9BSY9 194 aa11.45□□□□□ -0.58
MCF2-209ENST00000520602 TMEM232C9JQI7 657 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 TOB1P50616 345 aaPredicted RBP11.44□□□□□ -0.58
MCF2-209ENST00000520602 RCAN1P53805 252 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 SEC23AQ15436 765 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 GPIHBP1Q8IV16 184 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 SERPINB13Q9UIV8 391 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.44□□□□□ -0.58
MCF2-209ENST00000520602 A0A0U1RQG5 324 aaPredicted RBP11.44□□□□□ -0.58
MCF2-209ENST00000520602 CCDC175P0C221 793 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 ADRA2BP18089 450 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 ZNF771Q7L3S4 317 aaPredicted RBP11.44□□□□□ -0.58
MCF2-209ENST00000520602 TRIML1Q8N9V2 468 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 CUL5Q93034 780 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 CEP95Q96GE4 821 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 FEZ1Q99689 392 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 ANAPC4Q9UJX5 808 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 FAM196BA6NMK8 535 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 CALCRLQ16602 461 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 KCTD1Q719H9 257 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 CACNA2D4Q7Z3S7 1137 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 NEK8Q86SG6 692 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 ZNF397Q8NF99 534 aaPredicted RBP11.44□□□□□ -0.58
MCF2-209ENST00000520602 TBC1D16Q8TBP0 767 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 MXD3Q9BW11 206 aa11.44□□□□□ -0.58
MCF2-209ENST00000520602 USP27XA6NNY8 438 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 TRAPPC10P48553 1259 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 RAD51AP2Q09MP3 1159 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 ZYXQ15942 572 aaKnown RBP11.43□□□□□ -0.58
MCF2-209ENST00000520602 USH1GQ495M9 461 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 RBM26Q5T8P6 1007 aaKnown RBP11.43□□□□□ -0.58
MCF2-209ENST00000520602 SPATA1Q5VX52 437 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 SV2BQ7L1I2 683 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 CLEC10AQ8IUN9 316 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 CSGALNACT2Q8N6G5 542 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 DPF2Q92785 391 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 TSG101Q99816 390 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 CCDC40Q4G0X9 1142 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 FCHSD1Q86WN1 690 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 ZBTB9Q96C00 473 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 GSDMAQ96QA5 445 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 MAP3K14Q99558 947 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 PHF20Q9BVI0 1012 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 PARP4Q9UKK3 1724 aaKnown RBP11.43□□□□□ -0.58
MCF2-209ENST00000520602 GOLGA6L9A6NEM1 432 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 PP2D1A8MPX8 630 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 USP17L5A8MUK1 530 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 OR52Z1P0C646 297 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 SNX29Q8TEQ0 813 aa11.43□□□□□ -0.58
MCF2-209ENST00000520602 SRRTQ9BXP5 876 aaKnown RBP11.43□□□□□ -0.58
MCF2-209ENST00000520602 ARHGAP6O43182 974 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 GTPBP6O43824 516 aaPredicted RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 RPN1P04843 607 aaKnown RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 TBCKQ8TEA7 893 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 SPDYE3A6NKU9 549 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 LONP1P36776 959 aaKnown RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 SBK1Q52WX2 424 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 ZNF579Q8NAF0 562 aaKnown RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 MMRN2Q9H8L6 949 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 CGNQ9P2M7 1197 aaKnown RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 GYS1P13807 737 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 ENOX1Q8TC92 643 aaKnown RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 ZNF215Q9UL58 517 aaPredicted RBP11.42□□□□□ -0.58
MCF2-209ENST00000520602 ABCC6O95255 1503 aa11.42□□□□□ -0.58
MCF2-209ENST00000520602 PPIP5K2O43314 1243 aa11.41□□□□□ -0.58
MCF2-209ENST00000520602 KRT9P35527 623 aa11.41□□□□□ -0.58
MCF2-209ENST00000520602 TBC1D8BQ0IIM8 1120 aa11.41□□□□□ -0.58
MCF2-209ENST00000520602 CUL4BQ13620 913 aa11.41□□□□□ -0.58
MCF2-209ENST00000520602 MORC3Q14149 939 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms