RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 BUD31P41223 144 aaPredicted RBP4.72□□□□□ -1.65
CPNE3-204ENST00000517862 TCIRG1Q13488 830 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 C9orf50Q5SZB4 431 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 USPL1Q5W0Q7 1092 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 DZIP3Q86Y13 1208 aaKnown RBP4.72□□□□□ -1.65
CPNE3-204ENST00000517862 GJD3Q8N144 294 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 LARGE2Q8N3Y3 721 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 GIPC2Q8TF65 315 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 PIK3R5Q8WYR1 880 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 CCDC85AQ96PX6 553 aaPredicted RBP4.72□□□□□ -1.65
CPNE3-204ENST00000517862 TMPRSS4Q9NRS4 437 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 DNAAF2Q9NVR5 837 aaKnown RBP4.72□□□□□ -1.65
CPNE3-204ENST00000517862 ASAP1Q9ULH1 1129 aa4.72□□□□□ -1.65
CPNE3-204ENST00000517862 ZZEF1O43149 2961 aa4.71□□□□□ -1.65
CPNE3-204ENST00000517862 TEX15Q9BXT5 2789 aa4.71□□□□□ -1.65
CPNE3-204ENST00000517862 SPTAN1Q13813 2472 aaKnown RBP4.71□□□□□ -1.65
CPNE3-204ENST00000517862 MANSC4A6NHS7 340 aaPredicted RBP4.71□□□□□ -1.66
CPNE3-204ENST00000517862 SFI1A8K8P3 1242 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 H3BRB1 525 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 PRMT2P55345 433 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 LRRC41Q15345 812 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 NBPF20Q3BBV1 942 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 OTUD7BQ6GQQ9 843 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 TAS1R3Q7RTX0 852 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 FCHSD1Q86WN1 690 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 NIM1KQ8IY84 436 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 PGBD3Q8N328 593 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 GAS2L2Q8NHY3 880 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 RAET1EQ8TD07 263 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 ASIC4Q96FT7 647 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 MASTLQ96GX5 879 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 DEFB118Q96PH6 123 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 MKNK1Q9BUB5 465 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 TUT1Q9H6E5 874 aaKnown RBP4.71□□□□□ -1.66
CPNE3-204ENST00000517862 AVENQ9NQS1 362 aaPredicted RBP4.71□□□□□ -1.66
CPNE3-204ENST00000517862 CNOT7Q9UIV1 285 aaKnown RBP4.71□□□□□ -1.66
CPNE3-204ENST00000517862 DOLKQ9UPQ8 538 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 RIPOR2Q9Y4F9 1068 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 GPSM3Q9Y4H4 160 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 CDHR2Q9BYE9 1310 aa4.71□□□□□ -1.66
CPNE3-204ENST00000517862 KALRNO60229 2985 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 NPC1L1Q9UHC9 1359 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 ANKRD33BA6NCL7 494 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 DKK1O94907 266 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 ADRB1P08588 477 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 SRGNP10124 158 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 ALAS2P22557 587 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 ADD1P35611 737 aaKnown RBP4.7□□□□□ -1.66
CPNE3-204ENST00000517862 GTF2IP78347 998 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 TAGLNQ01995 201 aaKnown RBP4.7□□□□□ -1.66
CPNE3-204ENST00000517862 MTMR3Q13615 1198 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 KIF22Q14807 665 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 EFHC2Q5JST6 749 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 LRSAM1Q6UWE0 723 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 TMC4Q7Z404 712 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 SSBP4Q9BWG4 385 aaPredicted RBP4.7□□□□□ -1.66
CPNE3-204ENST00000517862 ARHGAP39Q9C0H5 1083 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 NOD1Q9Y239 953 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 TAF1P21675 1872 aa4.7□□□□□ -1.66
CPNE3-204ENST00000517862 NBEAQ8NFP9 2946 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 NUP155O75694 1391 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 SPATA31C2B4DYI2 1134 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 H0Y858 1186 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 GNRH1P01148 92 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 CXCL9Q07325 125 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 UBAP2LQ14157 1087 aaKnown RBP4.69□□□□□ -1.66
CPNE3-204ENST00000517862 OCLNQ16625 522 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 SWI5Q1ZZU3 235 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 CAPN12Q6ZSI9 719 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 NPAS4Q8IUM7 802 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 SP8Q8IXZ3 490 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 TPCN2Q8NHX9 752 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 TIFAQ96CG3 184 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 PSMD1Q99460 953 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 FSD1Q9BTV5 496 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 CDK19Q9BWU1 502 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 C11orf49Q9H6J7 331 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 TLR9Q9NR96 1032 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 DLL3Q9NYJ7 618 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 SEPT3Q9UH03 358 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 ADGRE2Q9UHX3 823 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 AOX1Q06278 1338 aa4.69□□□□□ -1.66
CPNE3-204ENST00000517862 DDX60LQ5H9U9 1706 aaKnown RBP4.69□□□□□ -1.66
CPNE3-204ENST00000517862 NFAT5O94916 1531 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 LILRA1O75019 489 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 SELPP16109 830 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 ATP1A2P50993 1020 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 TBC1D10BQ4KMP7 808 aaPredicted RBP4.68□□□□□ -1.66
CPNE3-204ENST00000517862 TRIM50Q86XT4 487 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 KIAA2013Q8IYS2 634 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 SIX5Q8N196 739 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 HERVK_113Q902F9 699 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 NKD2Q969F2 451 aaPredicted RBP4.68□□□□□ -1.66
CPNE3-204ENST00000517862 LENG1Q96BZ8 264 aaPredicted RBP4.68□□□□□ -1.66
CPNE3-204ENST00000517862 LTV1Q96GA3 475 aaPredicted RBP4.68□□□□□ -1.66
CPNE3-204ENST00000517862 NLRP3Q96P20 1036 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 ANKFY1Q9P2R3 1169 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 COG5Q9UP83 839 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 VPS8Q8N3P4 1428 aa4.68□□□□□ -1.66
CPNE3-204ENST00000517862 A0A0G2JMZ2 1700 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms