RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ATP2A1O14983 1001 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 ZBTB16Q05516 673 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 RPS6KA1Q15418 735 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 DAAM2Q86T65 1068 aa14.08□□□□□ -0.16
USP53-209ENST00000514665 MRPL44Q9H9J2 332 aaKnown RBP14.08□□□□□ -0.16
USP53-209ENST00000514665 CYP27B1O15528 508 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 PPP6R2O75170 966 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 VIMP08670 466 aaKnown RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 OR52Z1P0C646 297 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 MSL1Q68DK7 614 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 CTTNBP2NLQ9P2B4 639 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 LMTK3Q96Q04 1460 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 ENC1O14682 589 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 ARHGAP44Q17R89 818 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 CFAP221Q4G0U5 840 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 SEL1L2Q5TEA6 688 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 PCDHA12Q9UN75 941 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 AXIN2Q9Y2T1 843 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 CLTCL1P53675 1640 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 IFNAR1P17181 557 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 COPB1P53618 953 aaKnown RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 TTC14Q96N46 770 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 RNF26Q9BY78 433 aaPredicted RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 FOXP1Q9H334 677 aaPredicted RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 PIH1D3Q9NQM4 214 aaKnown RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 USP40Q9NVE5 1235 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 CDC42BPAQ5VT25 1732 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 BRD3Q15059 726 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 PEX26Q7Z412 305 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 NEK8Q86SG6 692 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 SYNE4Q8N205 404 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 SLC35F6Q8N357 371 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 TMEM87AQ8NBN3 555 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 MRRFQ96E11 262 aaKnown RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 DNAI2Q9GZS0 605 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 STMN4Q9H169 189 aaPredicted RBP14.07□□□□□ -0.16
USP53-209ENST00000514665 PCDHB6Q9Y5E3 794 aa14.07□□□□□ -0.16
USP53-209ENST00000514665 BUB1O43683 1085 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 CRKLP46109 303 aaKnown RBP14.06□□□□□ -0.16
USP53-209ENST00000514665 MYOCDQ8IZQ8 938 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 GSDMAQ96QA5 445 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 HAUS4Q9H6D7 363 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 SH2B2O14492 632 aaPredicted RBP14.06□□□□□ -0.16
USP53-209ENST00000514665 IKBKBO14920 756 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 FLOT1O75955 427 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 SEC31AO94979 1220 aaKnown RBP14.06□□□□□ -0.16
USP53-209ENST00000514665 GUCY2FP51841 1108 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 ZSCAN26Q16670 478 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 USPL1Q5W0Q7 1092 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 GPBP1Q86WP2 473 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 TPH2Q8IWU9 490 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 FNBP1Q96RU3 617 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 FMNL1O95466 1100 aaPredicted RBP14.06□□□□□ -0.16
USP53-209ENST00000514665 MYCLP12524 364 aaPredicted RBP14.06□□□□□ -0.16
USP53-209ENST00000514665 ABCB4P21439 1286 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 SCNN1DP51172 638 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 CCDC6Q16204 474 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 ERCC6L2Q5T890 1561 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 MAP3K4Q9Y6R4 1608 aa14.06□□□□□ -0.16
USP53-209ENST00000514665 SOS2Q07890 1332 aaPredicted RBP14.05□□□□□ -0.16
USP53-209ENST00000514665 H7C1W4 665 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 CALUO43852 315 aaPredicted RBP14.05□□□□□ -0.16
USP53-209ENST00000514665 WHAMMP3Q1A5X7 153 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 NSMFQ6X4W1 530 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 JDP2Q8WYK2 163 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 CARD10Q9BWT7 1032 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 LSM14BQ9BX40 385 aaKnown RBP14.05□□□□□ -0.16
USP53-209ENST00000514665 GLT8D2Q9H1C3 349 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 PAK2Q13177 524 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 RASGRF1Q13972 1273 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 EPSTI1Q96J88 318 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP53-209ENST00000514665 SAMD15Q9P1V8 674 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 MAN1B1Q9UKM7 699 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 ERCC5P28715 1186 aaPredicted RBP14.05□□□□□ -0.16
USP53-209ENST00000514665 IL6STP40189 918 aaPredicted RBP14.05□□□□□ -0.16
USP53-209ENST00000514665 TTLL11Q8NHH1 800 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 ARHGEF10LQ9HCE6 1279 aa14.05□□□□□ -0.16
USP53-209ENST00000514665 ACTN4O43707 911 aaKnown RBP14.04□□□□□ -0.16
USP53-209ENST00000514665 MMP1P03956 469 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 TBC1D22AQ8WUA7 517 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 TUBGCP2Q9BSJ2 902 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 PSTPIP2Q9H939 334 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 HEG1Q9ULI3 1381 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 ABCC3O15438 1527 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 PNPLA6Q8IY17 1366 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 B4DLN1 442 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 SLFN14P0C7P3 912 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 CDC25BP30305 580 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 MCAMP43121 646 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 RBL2Q08999 1139 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 PRR16Q569H4 304 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 TRIM58Q8NG06 486 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 DDX12PQ92771 950 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 LRRC45Q96CN5 670 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 NF2P35240 595 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 MXRA7P84157 204 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 NAP1L3Q99457 506 aaPredicted RBP14.04□□□□□ -0.16
USP53-209ENST00000514665 CDC23Q9UJX2 597 aa14.04□□□□□ -0.16
USP53-209ENST00000514665 IQGAP3Q86VI3 1631 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms