RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CAPN7Q9Y6W3 813 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 STK36Q9NRP7 1315 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 NUP98P52948 1817 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 ATP1A2P50993 1020 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 SND1Q7KZF4 910 aaKnown RBP eCLIP10.85□□□□□ -0.674e-8■■■■■ 28.4
VCAN-210ENST00000513960 ANKRD18AQ8IVF6 992 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 EFCAB13Q8IY85 973 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 STAG1Q8WVM7 1258 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 HSD3B7Q9H2F3 369 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 BLZF1Q9H2G9 400 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 TUBE1Q9UJT0 475 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 PNPLA7Q6ZV29 1317 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 STRCQ7RTU9 1775 aa10.85□□□□□ -0.67
VCAN-210ENST00000513960 hCG_1642624A0A1W2PR95 340 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 ABL1P00519 1130 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 SSBP05455 408 aaKnown RBP eCLIP10.84□□□□□ -0.67
VCAN-210ENST00000513960 CAVIN4Q5BKX8 364 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 CNGA4Q8IV77 575 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 NOSTRINQ8IVI9 506 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 CABP5Q9NP86 173 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 FAM217BQ9NTX9 383 aaPredicted RBP10.84□□□□□ -0.67
VCAN-210ENST00000513960 TTF2Q9UNY4 1162 aaKnown RBP10.84□□□□□ -0.67
VCAN-210ENST00000513960 NHSL1Q5SYE7 1610 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 MAGEB6P1A0A0J9YX57 407 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 GOLGA6BA6NDN3 693 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 CORO7P57737 925 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 CT47A1Q5JQC4 288 aaPredicted RBP10.84□□□□□ -0.67
VCAN-210ENST00000513960 MMS22LQ6ZRQ5 1243 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 TMEM139Q8IV31 216 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 ESR2Q92731 530 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 NCAPGQ9BPX3 1015 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 MED4Q9NPJ6 270 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 NDUFAB1O14561 156 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 MAP2K7O14733 419 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 DEXIO95424 95 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 NTSR2O95665 410 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 GGCXP38435 758 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 PPARAQ07869 468 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 CCDC181Q5TID7 509 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 EHD4Q9H223 541 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 BRMS1Q9HCU9 246 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 A0A087WUV0 522 aaPredicted RBP10.84□□□□□ -0.67
VCAN-210ENST00000513960 XBP1P17861 261 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 UBXN1Q04323 297 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 PTPAQ15257 358 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 WHAMMP3Q1A5X7 153 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 MCTP2Q6DN12 878 aa10.84□□□□□ -0.67
VCAN-210ENST00000513960 THRAP3Q9Y2W1 955 aaKnown RBP10.84□□□□□ -0.67
VCAN-210ENST00000513960 COL14A1Q05707 1796 aaKnown RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 ANKRD36CQ5JPF3 1778 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 ITPK1Q13572 414 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 RILPL1Q5EBL4 403 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 RESP18Q5W5W9 173 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 KCTD16Q68DU8 428 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 OTUD6BQ8N6M0 293 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 CTCFLQ8NI51 663 aaPredicted RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 SDR42E1Q8WUS8 393 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 MMP1P03956 469 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 GYG1P46976 350 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 NR5A1Q13285 461 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 USP49Q70CQ1 688 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 ZNF654Q8IZM8 581 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 FANCBQ8NB91 859 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 SECISBP2LQ93073 1101 aaKnown RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 DNAJC5Q9H3Z4 198 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 FAM169AQ9Y6X4 670 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 KDM4FA0A1W2PPD8 638 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 NUTM2BA6NNL0 878 aaPredicted RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 NUTM2EB1AL46 878 aaPredicted RBP10.83□□□□□ -0.68
VCAN-210ENST00000513960 BMP6P22004 513 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 BICDL1Q6ZP65 573 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 MAP3K14Q99558 947 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 MTA3Q9BTC8 594 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 HPSEQ9Y251 543 aa10.83□□□□□ -0.68
VCAN-210ENST00000513960 SPATA31A1Q5TZJ5 1347 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 GUCY1A2P33402 732 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 FXR1P51114 621 aaKnown RBP eCLIP10.82□□□□□ -0.68
VCAN-210ENST00000513960 MARCH10Q8NA82 808 aaPredicted RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 ENOX1Q8TC92 643 aaKnown RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 JPH2Q9BR39 696 aaPredicted RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 UBXN6Q9BZV1 441 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 CEP131Q9UPN4 1083 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 MFAP3LO75121 409 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 PLCD1P51178 756 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 ATP2B2Q01814 1243 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 C2orf54Q08AI8 447 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 SF3A3Q12874 501 aaKnown RBP eCLIP10.82□□□□□ -0.68
VCAN-210ENST00000513960 GBP6Q6ZN66 633 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 EP400NLQ6ZTU2 488 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 CEP57Q86XR8 500 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 CRACR2BQ8N4Y2 399 aaPredicted RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 BANK1Q8NDB2 785 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 ZNHIT6Q9NWK9 470 aaKnown RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 MYO5AQ9Y4I1 1855 aaKnown RBP10.82□□□□□ -0.68
VCAN-210ENST00000513960 IDEP14735 1019 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 CYP26C1Q6V0L0 522 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 IQCA1Q86XH1 822 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 CAPS2Q9BXY5 557 aa10.82□□□□□ -0.68
VCAN-210ENST00000513960 FOXP1Q9H334 677 aaPredicted RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms