RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 IFIT1BQ5T764 474 aaKnown RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 KCTD1Q719H9 257 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 MYL10Q9BUA6 226 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 ASCC2Q9H1I8 757 aaPredicted RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 WBP1LQ9NX94 342 aa11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 COL11A1P12107 1806 aaPredicted RBP11.51□□□□□ -0.57
TOPBP1-209ENST00000513818 WDR46O15213 610 aaKnown RBP11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 FOXN1O15353 648 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 EPB41L2O43491 1005 aaKnown RBP11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 GOLGA8HP0CJ92 632 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 RXRAP19793 462 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 RPS6KB1P23443 525 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 INHBEP58166 350 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 IRX3P78415 501 aaPredicted RBP11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 TSGA10IPQ3SY00 556 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 BLOC1S2Q6QNY1 142 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 PNMA1Q8ND90 353 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 GMCL1P1Q8NEA9 526 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 LPAR1Q92633 364 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 MKL1Q969V6 931 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 PARK7Q99497 189 aaKnown RBP11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 BEGAINQ9BUH8 593 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 CPVLQ9H3G5 476 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 KAT14Q9H8E8 782 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 LY9Q9HBG7 655 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 GPCPD1Q9NPB8 672 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 CPA4Q9UI42 421 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 ADGRA2Q96PE1 1338 aa11.5□□□□□ -0.57
TOPBP1-209ENST00000513818 ERICH2A1L162 156 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L15C9J2P7 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L13C9JLJ4 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L11C9JVI0 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L18D6R9N7 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L22D6RA61 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L17D6RBQ6 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L19D6RCP7 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L20D6RJB6 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 FLOT1O75955 427 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 PDHBP11177 359 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 TAL1P17542 331 aaPredicted RBP11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 OSBPP22059 807 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 USP17L24Q0WX57 530 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 OTUD7BQ6GQQ9 843 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 TTBK2Q6IQ55 1244 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 POTEEQ6S8J3 1075 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 NFXL1Q6ZNB6 911 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 CATSPERGQ6ZRH7 1159 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 Q6ZUG5 572 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 DHX32Q7L7V1 743 aaKnown RBP11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 DGKHQ86XP1 1220 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 IGDCC4Q8TDY8 1250 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 SMCR8Q8TEV9 937 aaPredicted RBP11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 ATG4CQ96DT6 458 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 P2RX7Q99572 595 aaKnown RBP11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 LARP6Q9BRS8 491 aaKnown RBP11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 PAGR1Q9BTK6 254 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 BACH2Q9BYV9 841 aa11.49□□□□□ -0.57
TOPBP1-209ENST00000513818 SPDYE16A6NNV3 312 aaPredicted RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 CA12O43570 354 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 HSPA8P11142 646 aaKnown RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 BMP3P12645 472 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 SLC16A2P36021 539 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 SLC1A4P43007 532 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 SNAP25P60880 206 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 HERVK_113P62684 666 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 EXOSC10Q01780 885 aaKnown RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 IKQ13123 557 aaPredicted RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 PABPC4Q13310 644 aaKnown RBP eCLIP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 SART3Q15020 963 aaKnown RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 PPP4R3BQ5MIZ7 849 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 NOL8Q76FK4 1167 aaKnown RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 CCDC144CPQ8IYA2 1237 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 NUP133Q8WUM0 1156 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 ANKS1AQ92625 1134 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 TMEM87BQ96K49 555 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 TTC14Q96N46 770 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 C22orf23Q9BZE7 217 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 ZFYVE28Q9HCC9 887 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 PNMA3Q9UL41 463 aa11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 NAP1L2Q9ULW6 460 aaPredicted RBP11.48□□□□□ -0.57
TOPBP1-209ENST00000513818 CCDC69A6NI79 296 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 TMEM232C9JQI7 657 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 ALDH1A1P00352 501 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 HOXA7P31268 230 aaPredicted RBP11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 NT5C2P49902 561 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 FGD1P98174 961 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 CAP1Q01518 475 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 ZNF543Q08ER8 600 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 APOBRQ0VD83 1088 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 CCDC178Q5BJE1 867 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 RUFY3Q7L099 469 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 MICU3Q86XE3 530 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 ZNF654Q8IZM8 581 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 HS6ST3Q8IZP7 471 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 ANKRD13CQ8N6S4 541 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 DCAF4Q8WV16 495 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 BRF1Q92994 677 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 KIFC2Q96AC6 838 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 GMCL1Q96IK5 515 aa11.47□□□□□ -0.57
TOPBP1-209ENST00000513818 ZSWIM6Q9HCJ5 1215 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms