RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SPATC1LQ9H0A9 340 aa11.51□□□□□ -0.57
RNF4-221ENST00000513643 FBXO28Q9NVF7 368 aa11.51□□□□□ -0.57
RNF4-221ENST00000513643 ZNF214Q9UL59 606 aaPredicted RBP11.51□□□□□ -0.57
RNF4-221ENST00000513643 A0A0G2JMZ2 1700 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 POTEFA5A3E0 1075 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 VWA5AO00534 786 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 ZNF213O14771 459 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 ATP2A1O14983 1001 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 ADCY3O60266 1144 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 FLOT1O75955 427 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 ECM2O94769 699 aaPredicted RBP11.5□□□□□ -0.57
RNF4-221ENST00000513643 SOX10P56693 466 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 HAND2P61296 217 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 CCNA1P78396 465 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 ATP2B2Q01814 1243 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 PTH1RQ03431 593 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 GRB14Q14449 540 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 TMEM132BQ14DG7 1078 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 MAP3K21Q5TCX8 1036 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 PLEKHH3Q7Z736 793 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 SKAP1Q86WV1 359 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 SOCS4Q8WXH5 440 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 MAP4K1Q92918 833 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 TTC14Q96N46 770 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 PAGR1Q9BTK6 254 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 TANGO6Q9C0B7 1094 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 CTNNA3Q9UI47 895 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 PLXNB2O15031 1838 aa11.5□□□□□ -0.57
RNF4-221ENST00000513643 TSPY2A6NKD2 308 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 STRNO43815 780 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 RANBP6O60518 1105 aaKnown RBP11.49□□□□□ -0.57
RNF4-221ENST00000513643 PTPREP23469 700 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 MTFR1Q15390 333 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 ERICH6BQ5W0A0 696 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 MFSD6Q6ZSS7 791 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.49□□□□□ -0.57
RNF4-221ENST00000513643 ABRAQ8N0Z2 381 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 PRPF38AQ8NAV1 312 aaKnown RBP11.49□□□□□ -0.57
RNF4-221ENST00000513643 NUP88Q99567 741 aaPredicted RBP11.49□□□□□ -0.57
RNF4-221ENST00000513643 RNF41Q9H4P4 317 aaPredicted RBP11.49□□□□□ -0.57
RNF4-221ENST00000513643 NEDD4P46934 1319 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 PDE4DIPQ5VU43 2346 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 PARP14Q460N5 1801 aa11.49□□□□□ -0.57
RNF4-221ENST00000513643 SLC15A5A6NIM6 579 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 GJB1P08034 283 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 SNHG28P0DPA3 235 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 ELNP15502 786 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 ERCC3P19447 782 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 MAP2K5Q13163 448 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 SLFN13Q68D06 897 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 UBE2Q1Q7Z7E8 422 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 DGKHQ86XP1 1220 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 RIOX2Q8IUF8 465 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 LRRC47Q8N1G4 583 aaKnown RBP11.48□□□□□ -0.57
RNF4-221ENST00000513643 RUFY2Q8WXA3 655 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 TRIB2Q92519 343 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 NUDT12Q9BQG2 462 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 SLF1Q9BQI6 1058 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 TMEM47Q9BQJ4 181 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 MROH8Q9H579 483 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 SLC38A10Q9HBR0 1119 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 PAK6Q9NQU5 681 aaPredicted RBP11.48□□□□□ -0.57
RNF4-221ENST00000513643 ZSWIM5Q9P217 1185 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 FEM1BQ9UK73 627 aa11.48□□□□□ -0.57
RNF4-221ENST00000513643 SLC25A27O95847 323 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 INHAP05111 366 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 CYP21A2P08686 494 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 TOP1P11387 765 aaKnown RBP11.47□□□□□ -0.57
RNF4-221ENST00000513643 BMP3P12645 472 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 EN2P19622 333 aaPredicted RBP11.47□□□□□ -0.57
RNF4-221ENST00000513643 GJA8P48165 433 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 IMMTQ16891 758 aaKnown RBP11.47□□□□□ -0.57
RNF4-221ENST00000513643 BTNL9Q6UXG8 535 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 TRMT44Q8IYL2 757 aaKnown RBP11.47□□□□□ -0.57
RNF4-221ENST00000513643 ESR2Q92731 530 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 SHISA4Q96DD7 197 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 LSG1Q9H089 658 aaKnown RBP11.47□□□□□ -0.57
RNF4-221ENST00000513643 CRISPLD2Q9H0B8 497 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 STX8Q9UNK0 236 aa11.47□□□□□ -0.57
RNF4-221ENST00000513643 RBBP6Q7Z6E9 1792 aaKnown RBP11.46□□□□□ -0.57
RNF4-221ENST00000513643 ZNF536O15090 1300 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 COBLO75128 1261 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 HMGCRP04035 888 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 FDX1P10109 184 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 CCL5P13501 91 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 CAPN2P17655 700 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 CYP2B6P20813 491 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 MCCP23508 829 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 STAT3P40763 770 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 RGS2P41220 211 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 OAZ1P54368 228 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 MLLT1Q03111 559 aaPredicted RBP11.46□□□□□ -0.57
RNF4-221ENST00000513643 TRIM32Q13049 653 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 CCDC136Q96JN2 1154 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 APBA2Q99767 749 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 ESYT1Q9BSJ8 1104 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 UNC93B1Q9H1C4 597 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 FLRT1Q9NZU1 646 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 RIPK3Q9Y572 518 aa11.46□□□□□ -0.57
RNF4-221ENST00000513643 TAF6LQ9Y6J9 622 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 235.3 ms