RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 WDR46O15213 610 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 PGK2P07205 417 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 ZMYM1Q5SVZ6 1142 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 DPP9Q86TI2 863 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 SHCBP1Q8NEM2 672 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 GDF15Q99988 308 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 CWC22Q9HCG8 908 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 ARPP21Q9UBL0 812 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 RIPK3Q9Y572 518 aa13.39□□□□□ -0.27
LIMCH1-214ENST00000512228 PLXNA1Q9UIW2 1896 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 F5H6K3 240 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 STRNO43815 780 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 RAD21O60216 631 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 GLRX3O76003 335 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 APPP05067 770 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 CYBAP13498 195 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 CAPN2P17655 700 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 CNGA1P29973 690 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 KLRC3Q07444 240 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 FAM47AQ5JRC9 791 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 ANKRD45Q5TZF3 282 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 MFSD14CQ5VZR4 134 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 GIMAP6Q6P9H5 292 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 CHMP4CQ96CF2 233 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 LRCH3Q96II8 777 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 CLIP2Q9UDT6 1046 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 DDX20Q9UHI6 824 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 ZNF214Q9UL59 606 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 IVNS1ABPQ9Y6Y0 642 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 TTC41PQ6P2S7 1318 aa13.38□□□□□ -0.27
LIMCH1-214ENST00000512228 NDUFB10O96000 172 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 TAL1P17542 331 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 MX1P20591 662 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 GJC2Q5T442 439 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 VPS53Q5VIR6 699 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 OLFML2BQ68BL8 750 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 MB21D1Q8N884 522 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 CEP95Q96GE4 821 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 DDRGK1Q96HY6 314 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 SENP6Q9GZR1 1112 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 MROH8Q9H579 483 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 MKNK2Q9HBH9 465 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 NYAP2Q9P242 653 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 PPP1R9AQ9ULJ8 1098 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 SZT2Q5T011 3432 aa13.37□□□□□ -0.27
LIMCH1-214ENST00000512228 ZNF236Q9UL36 1845 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 ROBO3Q96MS0 1386 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 ZFYP08048 801 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 STAT3P40763 770 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 RIOX2Q8IUF8 465 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 AMOTL1Q8IY63 956 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 MKL1Q969V6 931 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 GPATCH3Q96I76 525 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 MAML3Q96JK9 1138 aa13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 YTHDC1Q96MU7 727 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-214ENST00000512228 NMT2O60551 498 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 IGHDP01880 384 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 TDO2P48775 406 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 ATN1P54259 1190 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 CTDSPL2Q05D32 466 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 ZNF792Q3KQV3 632 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 RASGRP2Q7LDG7 609 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 LRRC47Q8N1G4 583 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 FSD1Q9BTV5 496 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 SH2D4AQ9H788 454 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 GOPCQ9HD26 462 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 IL17RBQ9NRM6 502 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 MTMR4Q9NYA4 1195 aa13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 RANBP2P49792 3224 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-214ENST00000512228 FCER1AP12319 257 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 BMP8BP34820 402 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 PDE1AP54750 535 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 IRX5P78411 483 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 TFAP4Q01664 338 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 PPARAQ07869 468 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 HDAC1Q13547 482 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 ZNF444Q8N0Y2 327 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 ABRAQ8N0Z2 381 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 NEDD1Q8NHV4 660 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 FAM227BQ96M60 508 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 MMP19Q99542 508 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 SLF1Q9BQI6 1058 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 MCM3APO60318 1980 aa13.34□□□□□ -0.27
LIMCH1-214ENST00000512228 ERC2O15083 957 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 SLC25A27O95847 323 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 ZNF865P0CJ78 1059 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 GNAT2P19087 354 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 SLC4A3P48751 1232 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 MDM2Q00987 491 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 CPXCR1Q8N123 301 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 LENG1Q96BZ8 264 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 FGD4Q96M96 766 aa13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 RAVER2Q9HCJ3 691 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-214ENST00000512228 DNAJC25-GNG10A0A024R161 153 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 SEPT4O43236 478 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 SNAI1O95863 264 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 SNAP25P60880 206 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 SLFN13Q68D06 897 aa13.32□□□□□ -0.28
LIMCH1-214ENST00000512228 FERMT2Q96AC1 680 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms