RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CPSF1Q10570 1443 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 RBM47A0AV96 593 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 LUC7L3O95232 432 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CXCR5P32302 372 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 TUBP50607 506 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 VAV2P52735 878 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 ARMC9Q7Z3E5 817 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 MTRQ99707 1265 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 EHD2Q9NZN4 543 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 ZMYM6O95789 1325 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 NDUFA10O95299 355 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CHGBP05060 677 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CYP21A2P08686 494 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 POLD1P28340 1107 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 AMOTQ4VCS5 1084 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 MED15Q96RN5 788 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 ABHD10Q9NUJ1 306 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 PCMTD2Q9NV79 361 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 CARMIL3Q8ND23 1372 aa13.39□□□□□ -0.27
LIMCH1-213ENST00000511496 PPIP5K2O43314 1243 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 CREB3O43889 395 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 TAF5LO75529 589 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 TRIM37O94972 964 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 ITGB3BPQ13352 177 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 CCDC57Q2TAC2 916 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 LACTB2Q53H82 288 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 PAPD7Q5XG87 772 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 VPS16Q9H269 839 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 KCNH3Q9ULD8 1083 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 CDC42BPBQ9Y5S2 1711 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 SAMD9LQ8IVG5 1584 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 KIF28PB7ZC32 967 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 FDPSP14324 419 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 PPP4R3AQ6IN85 833 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 NAF1Q96HR8 494 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 RBM17Q96I25 401 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 HAUS4Q9H6D7 363 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 THRAP3Q9Y2W1 955 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 REXO2Q9Y3B8 237 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 USP32Q8NFA0 1604 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 CARSP49589 748 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 BYSLQ13895 437 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 ZMYM1Q5SVZ6 1142 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 ARFGAP2Q8N6H7 521 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 DACH1Q9UI36 760 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 GGT7Q9UJ14 662 aa13.38□□□□□ -0.27
LIMCH1-213ENST00000511496 A8MUI8 341 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 PAK2Q13177 524 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 GLE1Q53GS7 698 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 UBE3BQ7Z3V4 1068 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 IQCKQ8N0W5 287 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 FAM163AQ96GL9 167 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 STIM2Q9P246 746 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 ZRANB1Q9UGI0 708 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 DUSP10Q9Y6W6 482 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 MAP3K5Q99683 1374 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 INO80Q9ULG1 1556 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 ZSCAN5CA6NGD5 496 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 CCT8L1PA6NM43 557 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 TRAPPC3O43617 180 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 KCNJ2P63252 427 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 RNF220Q5VTB9 566 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 LONP2Q86WA8 852 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 CNBD1Q8NA66 436 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 MLKLQ8NB16 471 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 SPATA4Q8NEY3 305 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 OR2W6PQ8NHA6 318 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 CEP131Q9UPN4 1083 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 NDUFB9Q9Y6M9 179 aa13.37□□□□□ -0.27
LIMCH1-213ENST00000511496 TRPM2O94759 1503 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 LIN7AO14910 233 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 ALDH1L1O75891 902 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 SLC39A14Q15043 492 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 C8orf74Q6P047 294 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 PROSER2Q86WR7 435 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 RAPGEF5Q92565 580 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 MMTAG2Q9BU76 263 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 NDST4Q9H3R1 872 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 MAP3K4Q9Y6R4 1608 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 ADD3Q9UEY8 706 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 ZC3H13Q5T200 1668 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 HMGB1P1B2RPK0 211 aaPredicted RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 ALDH3A1P30838 453 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 POSTNQ15063 836 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 BEND3Q5T5X7 828 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 DHX32Q7L7V1 743 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 CNKSR1Q969H4 720 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 SYT15Q9BQS2 421 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 EPB41L5Q9HCM4 733 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 WDR35Q9P2L0 1181 aa13.36□□□□□ -0.27
LIMCH1-213ENST00000511496 ATP10BO94823 1461 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 PDIA3P30101 505 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 DNA2P51530 1060 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 ZC3H6P61129 1189 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 STOX1Q6ZVD7 989 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 VWDEQ8N2E2 1590 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 KIF2BQ8N4N8 673 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 CCDC51Q96ER9 411 aa13.35□□□□□ -0.27
LIMCH1-213ENST00000511496 OCEL1Q9H607 264 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms