RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 C17orf99Q6UX52 265 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 DGKHQ86XP1 1220 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 GTF3C2Q8WUA4 911 aaPredicted RBP13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 TTC14Q96N46 770 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 HOXC10Q9NYD6 342 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 SYNPO2Q9UMS6 1093 aa13.41□□□□□ -0.26
LIMCH1-210ENST00000509454 PRC1O43663 620 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 PEX10O60683 326 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 EIF5BO60841 1220 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 FMNL1O95466 1100 aaPredicted RBP13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 BMP3P12645 472 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 MCM5P33992 734 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 KRT32Q14532 448 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 PLS1Q14651 629 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 WTAPQ15007 396 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 ARHGEF6Q15052 776 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 NOM1Q5C9Z4 860 aaKnown RBP13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 TMEM67Q5HYA8 995 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 WDR78Q5VTH9 848 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 KCTD1Q719H9 257 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 ENAHQ8N8S7 591 aaPredicted RBP13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 KIFC2Q96AC6 838 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 SLF1Q9BQI6 1058 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 FBXO28Q9NVF7 368 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 PCNTO95613 3336 aa13.4□□□□□ -0.26
LIMCH1-210ENST00000509454 FRMPD2Q68DX3 1309 aaPredicted RBP13.4□□□□□ -0.27
LIMCH1-210ENST00000509454 SPDYE16A6NNV3 312 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 TMEM232C9JQI7 657 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 BCRP11274 1271 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 HSPA4P34932 840 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 LACTBP83111 547 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 FAM110CQ1W6H9 321 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 RCSD1Q6JBY9 416 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 NFXL1Q6ZNB6 911 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 RASGRP2Q7LDG7 609 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 MB21D2Q8IYB1 491 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 RASEFQ8IZ41 740 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 PNMA1Q8ND90 353 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 GPRC5AQ8NFJ5 357 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 DCAF4Q8WV16 495 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 ATG4CQ96DT6 458 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 NEK1Q96PY6 1258 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 GPCPD1Q9NPB8 672 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 FEM1BQ9UK73 627 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 TRIM17Q9Y577 477 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 PSMC4P43686 418 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 SLC4A3P48751 1232 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 FCGRTP55899 365 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 FGD1P98174 961 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 GMCL1Q96IK5 515 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 JAKMIP1Q96N16 626 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 USP26Q9BXU7 913 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 LRRC2Q9BYS8 371 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 ARHGAP39Q9C0H5 1083 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 EFCC1Q9HA90 598 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 TXNRD2Q9NNW7 524 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 PPP1R9AQ9ULJ8 1098 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 RABGAP1Q9Y3P9 1069 aa13.39□□□□□ -0.27
LIMCH1-210ENST00000509454 NOVP48745 357 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 STAT2P52630 851 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 ANTXR2P58335 489 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 ERVK-9P63128 1117 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 ERVK-24P63145 666 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 CCNA1P78396 465 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 ADCK5Q3MIX3 580 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 CTU1Q7Z7A3 348 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 CHURC1Q8WUH1 139 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 RBPJLQ9UBG7 517 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 SNX14Q9Y5W7 946 aa13.38□□□□□ -0.27
LIMCH1-210ENST00000509454 TNPO2O14787 897 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 ZBED4O75132 1171 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 SEC23AQ15436 765 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 COL13A1Q5TAT6 717 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 FAM160B2Q86V87 743 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 MB21D1Q8N884 522 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 PRPF38AQ8NAV1 312 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 ANKS1AQ92625 1134 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 TCEANC2Q96MN5 208 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 BTBD7Q9P203 1132 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 MORF4L1Q9UBU8 362 aa13.37□□□□□ -0.27
LIMCH1-210ENST00000509454 MYPNQ86TC9 1320 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 CCDC69A6NI79 296 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 VWA5AO00534 786 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 EPB41L2O43491 1005 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 DHX16O60231 1041 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 ABCB7O75027 752 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 HMGB1P09429 215 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 PARP1P09874 1014 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 GOLGA8HP0CJ92 632 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 PDHBP11177 359 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 PSMA5P28066 241 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 HOXD10P28358 340 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 SLC16A2P36021 539 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 Q3C1V9 767 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 TSGA10IPQ3SY00 556 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 TTBK2Q6IQ55 1244 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 BLOC1S2Q6QNY1 142 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 CATIPQ7Z7H3 387 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 CPXCR1Q8N123 301 aa13.36□□□□□ -0.27
LIMCH1-210ENST00000509454 NUP133Q8WUM0 1156 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms