RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 GSG1L2A8MUP6 293 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 LRIG2O94898 1065 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 NFICP08651 508 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 FURINP09958 794 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 ELNP15502 786 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 RAB6AP20340 208 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 CD247P20963 164 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 ZNF445P59923 1031 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 HNRNPUQ00839 825 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP53-204ENST00000507906 CYP4F3Q08477 520 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 TRIM28Q13263 835 aaKnown RBP5.67□□□□□ -1.5
USP53-204ENST00000507906 AUHQ13825 339 aaKnown RBP5.67□□□□□ -1.5
USP53-204ENST00000507906 HSP90AA2PQ14568 343 aaPredicted RBP5.67□□□□□ -1.5
USP53-204ENST00000507906 STRA8Q7Z7C7 330 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 RNF180Q86T96 592 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 C7orf61Q8IZ16 206 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 KCT2Q8NC54 265 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 CDC6Q99741 560 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 IER2Q9BTL4 223 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 IRF2BPLQ9H1B7 796 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 SEMA6CQ9H3T2 930 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 GP6Q9HCN6 339 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 LRP2BPQ9P2M1 347 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 PCOLCE2Q9UKZ9 415 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 EMC9Q9Y3B6 208 aa5.67□□□□□ -1.5
USP53-204ENST00000507906 PLD2O14939 933 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 DLX3O60479 287 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 DNAJC8O75937 253 aaPredicted RBP5.66□□□□□ -1.5
USP53-204ENST00000507906 FGFR1P11362 822 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 STAT3P40763 770 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 NTRK3Q16288 839 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 NBPF9Q3BBW0 867 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 SGO2Q562F6 1265 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 ZC3H12BQ5HYM0 836 aaKnown RBP5.66□□□□□ -1.5
USP53-204ENST00000507906 LETMD1Q6P1Q0 360 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 FDX2Q6P4F2 183 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 SEZ6L2Q6UXD5 910 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 NSMFQ6X4W1 530 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 ADAT2Q7Z6V5 191 aaKnown RBP5.66□□□□□ -1.5
USP53-204ENST00000507906 DDX42Q86XP3 938 aaKnown RBP eCLIP5.66□□□□□ -1.5
USP53-204ENST00000507906 SCUBE1Q8IWY4 988 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 ARHGEF39Q8N4T4 335 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 BVESQ8NE79 360 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 SLC7A14Q8TBB6 771 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 FBLIM1Q8WUP2 373 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 BTN2A2Q8WVV5 523 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 MIPEPQ99797 713 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 TARS2Q9BW92 718 aaKnown RBP5.66□□□□□ -1.5
USP53-204ENST00000507906 PRDM14Q9GZV8 571 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 MKRN2Q9H000 416 aaKnown RBP5.66□□□□□ -1.5
USP53-204ENST00000507906 MINPP1Q9UNW1 487 aa5.66□□□□□ -1.5
USP53-204ENST00000507906 AGRPO00253 132 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 PDE8AO60658 829 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 PDGFRBP09619 1106 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 CDK5R2Q13319 367 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 FNDC3BQ53EP0 1204 aaKnown RBP5.65□□□□□ -1.5
USP53-204ENST00000507906 ANKRD34AQ69YU3 496 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 DENND5AQ6IQ26 1287 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 Q6ZS46 218 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 FGD2Q7Z6J4 655 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 RAVER1Q8IY67 606 aaKnown RBP5.65□□□□□ -1.5
USP53-204ENST00000507906 MFSD2AQ8NA29 543 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 SMARCC1Q92922 1105 aaPredicted RBP5.65□□□□□ -1.5
USP53-204ENST00000507906 SCLYQ96I15 445 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 TRIM39Q9HCM9 518 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 WHRNQ9P202 907 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 MKL2Q9ULH7 1088 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 AKT3Q9Y243 479 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 ATP8A1Q9Y2Q0 1164 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 DAGLAQ9Y4D2 1042 aa5.65□□□□□ -1.5
USP53-204ENST00000507906 CCDC163A0A0D9SF12 145 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 ARNTLO00327 626 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 GNB5O14775 395 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 LEFTY1O75610 366 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 EOMESO95936 686 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 NOS3P29474 1203 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 PPP2R5DQ14738 602 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 TMC3Q7Z5M5 1100 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 TRIM59Q8IWR1 403 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 DCAF11Q8TEB1 546 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 RCC1LQ96I51 464 aaKnown RBP5.64□□□□□ -1.51
USP53-204ENST00000507906 FAM46AQ96IP4 442 aaKnown RBP5.64□□□□□ -1.51
USP53-204ENST00000507906 AKTIPQ9H8T0 292 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 SLC52A2Q9HAB3 445 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 C1GALT1Q9NS00 363 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 CGGBP1Q9UFW8 167 aaPredicted RBP5.64□□□□□ -1.51
USP53-204ENST00000507906 G3BP2Q9UN86 482 aaKnown RBP5.64□□□□□ -1.51
USP53-204ENST00000507906 THRAP3Q9Y2W1 955 aaKnown RBP5.64□□□□□ -1.51
USP53-204ENST00000507906 SUGT1Q9Y2Z0 365 aa5.64□□□□□ -1.51
USP53-204ENST00000507906 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.63□□□□□ -1.51
USP53-204ENST00000507906 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.63□□□□□ -1.51
USP53-204ENST00000507906 VAMP4O75379 141 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 PPM1BO75688 479 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 KCNH1O95259 989 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 CNGA1P29973 690 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 USP11P51784 963 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 PCBP1Q15365 356 aaKnown RBP eCLIP5.63□□□□□ -1.51
USP53-204ENST00000507906 PRSS53Q2L4Q9 553 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 GTF2IRD2BQ6EKJ0 949 aa5.63□□□□□ -1.51
USP53-204ENST00000507906 CNNM4Q6P4Q7 775 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms