RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 RSPO4Q2I0M5 234 aaPredicted RBP4.33□□□□□ -1.72
TCOF1-208ENST00000506063 SHROOM1Q2M3G4 852 aaPredicted RBP4.33□□□□□ -1.72
TCOF1-208ENST00000506063 CTC1Q2NKJ3 1217 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 MCTP2Q6DN12 878 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 RNF180Q86T96 592 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 HERC6Q8IVU3 1022 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 SLC43A3Q8NBI5 491 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 WDR18Q9BV38 432 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 HIPK3Q9H422 1215 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.33□□□□□ -1.72
TCOF1-208ENST00000506063 SUGT1Q9Y2Z0 365 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 RABGAP1Q9Y3P9 1069 aa4.33□□□□□ -1.72
TCOF1-208ENST00000506063 LRRFIP2Q9Y608 721 aaKnown RBP4.33□□□□□ -1.72
TCOF1-208ENST00000506063 GRIN2DO15399 1336 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 MAST3O60307 1309 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 MOXD2PA6NHM9 499 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 RBAK-RBAKDNI3L0D1 243 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 CHL1O00533 1208 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 ADCY6O43306 1168 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 ENTPD3O75355 529 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 RARBP10826 455 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 CST5P28325 142 aaPredicted RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 CAP2P40123 477 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 ATXN1P54253 815 aaKnown RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 CHAF1AQ13111 956 aaPredicted RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 UBE4AQ14139 1066 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 CWF19L2Q2TBE0 894 aaKnown RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 LBX2Q6XYB7 198 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 UBE3BQ7Z3V4 1068 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 PHOSPHO2Q8TCD6 241 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 GTF3C2Q8WUA4 911 aaPredicted RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 TBC1D22AQ8WUA7 517 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 NUP133Q8WUM0 1156 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 SCLYQ96I15 445 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 MAML3Q96JK9 1138 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 SLC9A7Q96T83 725 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 POP1Q99575 1024 aaKnown RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 TBC1D2Q9BYX2 928 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 OSBPL5Q9H0X9 879 aaPredicted RBP4.32□□□□□ -1.72
TCOF1-208ENST00000506063 EMILIN3Q9NT22 766 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 NRBP1Q9UHY1 535 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 PCDHGC5Q9Y5F6 944 aa4.32□□□□□ -1.72
TCOF1-208ENST00000506063 LAMA5O15230 3695 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 SCN10AQ9Y5Y9 1956 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 A0A0U1RQG5 324 aaPredicted RBP4.31□□□□□ -1.72
TCOF1-208ENST00000506063 NEURL1BA8MQ27 555 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 ZBBXA8MT70 800 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 USP17L5A8MUK1 530 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 TBX10O75333 385 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 GLRX3O76003 335 aaKnown RBP4.31□□□□□ -1.72
TCOF1-208ENST00000506063 FOXO4P98177 505 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 GOLGA2Q08379 1002 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 TCEAL5Q5H9L2 206 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 TMCO2Q7Z6W1 182 aaPredicted RBP4.31□□□□□ -1.72
TCOF1-208ENST00000506063 MRPL38Q96DV4 380 aaKnown RBP4.31□□□□□ -1.72
TCOF1-208ENST00000506063 ZNF594Q96JF6 807 aaPredicted RBP4.31□□□□□ -1.72
TCOF1-208ENST00000506063 RIPOR3Q96MK2 946 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 USP40Q9NVE5 1235 aa4.31□□□□□ -1.72
TCOF1-208ENST00000506063 TEP1Q99973 2627 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 ANKRD18BA2A2Z9 1011 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 LINC01553A4QN01 128 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 SPDYE16A6NNV3 312 aaPredicted RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 STXBP3O00186 592 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 PLIN1O60240 522 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 B4GALT4O60513 344 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 ASGR1P07306 291 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 PFKMP08237 780 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 PRDX5P30044 214 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 NKX3-2P78367 333 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 CCNA1P78396 465 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 SMAD4Q13485 552 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 COL9A3Q14050 684 aaPredicted RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 GCKRQ14397 625 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 GPNMBQ14956 572 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 CLUL1Q15846 466 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 WDR78Q5VTH9 848 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 KIAA0319Q5VV43 1072 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 DPP9Q86TI2 863 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 RPAINQ86UA6 219 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 CCAR1Q8IX12 1150 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 RPUSD2Q8IZ73 545 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 DCLK2Q8N568 766 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 VGLL2Q8N8G2 317 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 C12orf42Q96LP6 360 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 MOV10L1Q9BXT6 1211 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 TRPV6Q9H1D0 765 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 UPF3AQ9H1J1 476 aaKnown RBP4.3□□□□□ -1.72
TCOF1-208ENST00000506063 DNAJC18Q9H819 358 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 MTUS1Q9ULD2 1270 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 FAM50BQ9Y247 325 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 NUDCQ9Y266 331 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 MAP3K2Q9Y2U5 619 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 IVNS1ABPQ9Y6Y0 642 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 IGSF10Q6WRI0 2623 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 ZNF462Q96JM2 2506 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 ITPR1Q14643 2758 aa4.3□□□□□ -1.72
TCOF1-208ENST00000506063 MYO18BQ8IUG5 2567 aa4.29□□□□□ -1.72
TCOF1-208ENST00000506063 ADAMTS20P59510 1910 aa4.29□□□□□ -1.72
TCOF1-208ENST00000506063 CELSR3Q9NYQ7 3312 aa4.29□□□□□ -1.72
TCOF1-208ENST00000506063 C19orf81C9J6K1 198 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms