RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RTEL1Q9NZ71 1219 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 ZBTB21Q9ULJ3 1066 aa18.19■□□□□ 0.5
CCDC88B-209ENST00000494080 SARM1Q6SZW1 724 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 KCNQ2O43526 872 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 TBC1D8BQ0IIM8 1120 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 GPIHBP1Q8IV16 184 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 ZNF526Q8TF50 670 aaPredicted RBP18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 PGBD1Q96JS3 809 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 CAPN7Q9Y6W3 813 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 STX10O60499 249 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 TRIM37O94972 964 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 SLFN14P0C7P3 912 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 CCT5P48643 541 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 NR5A1Q13285 461 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 DYMQ7RTS9 669 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 STRBPQ96SI9 672 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 LRWD1Q9UFC0 647 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 SMCO2A6NFE2 343 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 KLRF2D3W0D1 207 aa18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 SEPT7Q16181 437 aaKnown RBP18.18■□□□□ 0.5
CCDC88B-209ENST00000494080 TRAF5O00463 557 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 INF2Q27J81 1249 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 REXO1Q8N1G1 1221 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 BIN2Q9UBW5 565 aaPredicted RBP18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 CDC23Q9UJX2 597 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 DIP2AQ14689 1571 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 SCG2P13521 617 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 ATP1A3P13637 1013 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 PLS1Q14651 629 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 LRRC47Q8N1G4 583 aaKnown RBP18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 CSGALNACT2Q8N6G5 542 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 RGS22Q8NE09 1264 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 PSMB7Q99436 277 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 MED4Q9NPJ6 270 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 RESTQ13127 1097 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 DIXDC1Q155Q3 683 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 HINFPQ9BQA5 517 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 TAB2Q9NYJ8 693 aa18.17■□□□□ 0.5
CCDC88B-209ENST00000494080 A0A1B0GUA9 196 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 KIF23Q02241 960 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 SLC39A14Q15043 492 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 ZRSR2Q15696 482 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 USH1GQ495M9 461 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 SMIM5Q71RC9 77 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 FRMPD2Q68DX3 1309 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 SH2B2O14492 632 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 GNGT1P63211 74 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 PPP4R3AQ6IN85 833 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 KRT25Q7Z3Z0 450 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 BLIDQ8IZY5 108 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 LARGE2Q8N3Y3 721 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 SNX29Q8TEQ0 813 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 ATP8A2Q9NTI2 1148 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 CHMP2AO43633 222 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 ATP2B4P23634 1241 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 ADCY7P51828 1080 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 SP4Q02446 784 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 PPFIA1Q13136 1202 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 PAK1Q13153 545 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 WHAMMP3Q1A5X7 153 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 ATG9AQ7Z3C6 839 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 GPR101Q96P66 508 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.16■□□□□ 0.56e-10■■■■■ 64.9
CCDC88B-209ENST00000494080 PCDHA5Q9Y5H7 936 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 TMEM131LA2VDJ0 1609 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 DEPDC5O75140 1603 aa18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 RABL6Q3YEC7 729 aaPredicted RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 QTRT2Q9H974 415 aaKnown RBP18.16■□□□□ 0.5
CCDC88B-209ENST00000494080 PTGDRQ13258 359 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 ICE2Q659A1 982 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 LINC00301Q8NCQ3 95 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 STK32BQ9NY57 414 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 CEP170BQ9Y4F5 1589 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 CEMIPQ8WUJ3 1361 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 NOC4LQ9BVI4 516 aaKnown RBP18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 TMEM51Q9NW97 253 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 PPLO60437 1756 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 SERPINB2P05120 415 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 PDIA6Q15084 440 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 TEKT1Q969V4 418 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 A0A1W2PQ27 194 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 A0A1W2PQ64 194 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 A0A1W2PQD8 194 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 CYP2C19P33261 490 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 C8orf74Q6P047 294 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 CC2D1AQ6P1N0 951 aaPredicted RBP18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 JAKMIP2Q96AA8 810 aa18.15■□□□□ 0.5
CCDC88B-209ENST00000494080 FAM13AO94988 1023 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 EEF2KMTQ96G04 330 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 SAR1BQ9Y6B6 198 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 ALDH1B1P30837 517 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 ARHGAP25P42331 645 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 CLNS1AP54105 237 aaKnown RBP18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 RASGRP4Q8TDF6 673 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 BICD1Q96G01 975 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 XDHP47989 1333 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 GCOM1H8Y6P7 765 aaPredicted RBP18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 USP17L8P0C7I0 530 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 MYZAPP0CAP1 466 aa18.14■□□□□ 0.49
CCDC88B-209ENST00000494080 TBC1D10CQ8IV04 446 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 187.7 ms