RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 TRPV1Q8NER1 839 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 IPO4Q8TEX9 1081 aaKnown RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 ANP32BQ92688 251 aaKnown RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 STRBPQ96SI9 672 aaKnown RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 NUDT12Q9BQG2 462 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 EPB41L4AQ9HCS5 686 aaPredicted RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 CABP5Q9NP86 173 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 RBM27Q9P2N5 1060 aaKnown RBP9.72□□□□□ -0.85
HDAC6-234ENST00000493923 RABGAP1Q9Y3P9 1069 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 SLC4A4Q9Y6R1 1079 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 SMCHD1A6NHR9 2005 aa9.72□□□□□ -0.85
HDAC6-234ENST00000493923 GSG1L2A8MUP6 293 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 OFD1O75665 1012 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 IGHA2P01877 340 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 MAPK4P31152 587 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 USP14P54578 494 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 HS1BP3Q53T59 392 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 LBX2Q6XYB7 198 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 C16orf86Q6ZW13 317 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 ATG4CQ96DT6 458 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 SEC62Q99442 399 aaKnown RBP9.71□□□□□ -0.86
HDAC6-234ENST00000493923 MOV10L1Q9BXT6 1211 aaKnown RBP9.71□□□□□ -0.86
HDAC6-234ENST00000493923 GTPBP4Q9BZE4 634 aaKnown RBP9.71□□□□□ -0.86
HDAC6-234ENST00000493923 ATP8A2Q9NTI2 1148 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 ECHDC1Q9NTX5 307 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 FBXO28Q9NVF7 368 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 PFASO15067 1338 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 RPTORQ8N122 1335 aa9.71□□□□□ -0.86
HDAC6-234ENST00000493923 DYNC1I1O14576 645 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 XRCC5P13010 732 aaKnown RBP9.7□□□□□ -0.86
HDAC6-234ENST00000493923 PTPREP23469 700 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 ICA1Q05084 483 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 CCDC173Q0VFZ6 552 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 MAP2K5Q13163 448 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 CSPP1Q1MSJ5 1256 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 C8orf34Q49A92 452 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 WDR78Q5VTH9 848 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 KIAA1211Q6ZU35 1233 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 TMEM179Q6ZVK1 233 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 KBTBD3Q8NAB2 608 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 PI4K2BQ8TCG2 481 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 GCC1Q96CN9 775 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 CRBNQ96SW2 442 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 APBA2Q99767 749 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 UPF2Q9HAU5 1272 aaKnown RBP9.7□□□□□ -0.86
HDAC6-234ENST00000493923 HMX1Q9NP08 348 aaPredicted RBP9.7□□□□□ -0.86
HDAC6-234ENST00000493923 OGDHLQ9ULD0 1010 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 ZMYND8Q9ULU4 1186 aaPredicted RBP9.7□□□□□ -0.86
HDAC6-234ENST00000493923 TMX2Q9Y320 296 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 TACC3Q9Y6A5 838 aa9.7□□□□□ -0.86
HDAC6-234ENST00000493923 SLC15A5A6NIM6 579 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 SOX1O00570 391 aaPredicted RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 FOXP2O15409 715 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 RNF113AO15541 343 aaKnown RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 COBLO75128 1261 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 EEF2P13639 858 aaKnown RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 ZKSCAN1P17029 563 aaPredicted RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 RASA1P20936 1047 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 CYP2C19P33261 490 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 RGS2P41220 211 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 DMTNQ08495 405 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 GRB14Q14449 540 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 SKOR2Q2VWA4 1001 aaPredicted RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 SOCS4Q8WXH5 440 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 NUP88Q99567 741 aaPredicted RBP9.69□□□□□ -0.86
HDAC6-234ENST00000493923 HTATIP2Q9BUP3 242 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 SALL3Q9BXA9 1300 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 TANGO6Q9C0B7 1094 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.69□□□□□ -0.868e-17■■■■□ 24.1
HDAC6-234ENST00000493923 VCPKMTQ9H867 229 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 GRPEL1Q9HAV7 217 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 STAP2Q9UGK3 403 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 SWAP70Q9UH65 585 aa9.69□□□□□ -0.86
HDAC6-234ENST00000493923 MYH4Q9Y623 1939 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 LAMA2P24043 3122 aaKnown RBP9.68□□□□□ -0.86
HDAC6-234ENST00000493923 GPAA1O43292 621 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 PRDM1O75626 825 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 LETM1O95202 739 aaPredicted RBP9.68□□□□□ -0.86
HDAC6-234ENST00000493923 COL6A1P12109 1028 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 SYN1P17600 705 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 ERCC3P19447 782 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 COG2Q14746 738 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 TMEM132BQ14DG7 1078 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 PRAMEF19Q5SWL8 479 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 CCDC129Q6ZRS4 1044 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 C7orf61Q8IZ16 206 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 REPS2Q8NFH8 660 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 GTF3C2Q8WUA4 911 aaPredicted RBP9.68□□□□□ -0.86
HDAC6-234ENST00000493923 SPATC1LQ9H0A9 340 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 CHMP4BQ9H444 224 aaKnown RBP9.68□□□□□ -0.86
HDAC6-234ENST00000493923 INCENPQ9NQS7 918 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 ZNF236Q9UL36 1845 aa9.68□□□□□ -0.86
HDAC6-234ENST00000493923 IGKV6D-41A0A0C4DH26 115 aa9.67□□□□□ -0.86
HDAC6-234ENST00000493923 MINDY4BA8MYZ0 360 aa9.67□□□□□ -0.86
HDAC6-234ENST00000493923 EVI5O60447 810 aa9.67□□□□□ -0.86
HDAC6-234ENST00000493923 FLOT1O75955 427 aa9.67□□□□□ -0.86
HDAC6-234ENST00000493923 HOXC6P09630 235 aa9.67□□□□□ -0.86
HDAC6-234ENST00000493923 MSNP26038 577 aaKnown RBP9.67□□□□□ -0.86
HDAC6-234ENST00000493923 ADORA2AP29274 412 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms