RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 KIAA1683Q9H0B3 1180 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 RBPJLQ9UBG7 517 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 HCSTQ9UBK5 93 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 SWAP70Q9UH65 585 aa12.79□□□□□ -0.36
COL6A3-214ENST00000493608 SUPT16HQ9Y5B9 1047 aaKnown RBP12.79□□□□□ -0.36
COL6A3-214ENST00000493608 RBBP6Q7Z6E9 1792 aaKnown RBP12.79□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L15C9J2P7 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L13C9JLJ4 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L11C9JVI0 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L18D6R9N7 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L22D6RA61 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L17D6RBQ6 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L19D6RCP7 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L20D6RJB6 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 GPAA1O43292 621 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 IGHDP01880 384 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 APPP05067 770 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 ZFYP08048 801 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-214ENST00000493608 CCL5P13501 91 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 VCAM1P19320 739 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP14P54578 494 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 USP17L24Q0WX57 530 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 KIAA1755Q5JYT7 1200 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 CATSPERGQ6ZRH7 1159 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 C16orf86Q6ZW13 317 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 SIAH1Q8IUQ4 282 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 GPRC5AQ8NFJ5 357 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 GCC1Q96CN9 775 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 C12orf42Q96LP6 360 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 RPAP3Q9H6T3 665 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-214ENST00000493608 MORF4L1Q9UBU8 362 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 SALL3Q9BXA9 1300 aa12.78□□□□□ -0.36
COL6A3-214ENST00000493608 PLXNB2O15031 1838 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 ATP2B2Q01814 1243 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 TMEM179Q6ZVK1 233 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 LNPKQ9C0E8 428 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 RNF208Q9H0X6 261 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 UNC93B1Q9H1C4 597 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 EPB41L4AQ9HCS5 686 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-214ENST00000493608 GJD2Q9UKL4 321 aa12.77□□□□□ -0.37
COL6A3-214ENST00000493608 PPP1R3GB7ZBB8 358 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 PATL2C9JE40 543 aaKnown RBP12.76□□□□□ -0.37
COL6A3-214ENST00000493608 CNMDO75829 334 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 INHAP05111 366 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 TDO2P48775 406 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 PDE1AP54750 535 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 ERVK-9P63128 1117 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 ERVK-24P63145 666 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 UBXN2AP68543 259 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 IRX6P78412 446 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-214ENST00000493608 CCDC129Q6ZRS4 1044 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 SPICE1Q8N0Z3 855 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 PORCNQ9H237 461 aa12.76□□□□□ -0.37
COL6A3-214ENST00000493608 RWDD1Q9H446 243 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-214ENST00000493608 ARPP21Q9UBL0 812 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-214ENST00000493608 MKI67P46013 3256 aaKnown RBP12.76□□□□□ -0.37
COL6A3-214ENST00000493608 EEF2P13639 858 aaKnown RBP12.75□□□□□ -0.37
COL6A3-214ENST00000493608 CYP2B6P20813 491 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 COL9A1P20849 921 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 ICA1Q05084 483 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 TRIM32Q13049 653 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 IRF5Q13568 498 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 LRRFIP1Q32MZ4 808 aaKnown RBP12.75□□□□□ -0.37
COL6A3-214ENST00000493608 SBK1Q52WX2 424 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 ZMYM1Q5SVZ6 1142 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 WDR78Q5VTH9 848 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 CCAR1Q8IX12 1150 aaKnown RBP12.75□□□□□ -0.37
COL6A3-214ENST00000493608 IFNL3Q8IZI9 196 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 CCDC17Q96LX7 622 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 MKNK2Q9HBH9 465 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 ARHGEF10LQ9HCE6 1279 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 BTBD7Q9P203 1132 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 STAP2Q9UGK3 403 aa12.75□□□□□ -0.37
COL6A3-214ENST00000493608 SPDYE16A6NNV3 312 aaPredicted RBP12.74□□□□□ -0.37
COL6A3-214ENST00000493608 RAD21O60216 631 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 PRDM1O75626 825 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 GNAT2P19087 354 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 RASA1P20936 1047 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 GIMAP6Q6P9H5 292 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 PXYLP1Q8TE99 480 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 KCTD12Q96CX2 325 aaKnown RBP12.74□□□□□ -0.37
COL6A3-214ENST00000493608 SHISA4Q96DD7 197 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 EPAS1Q99814 870 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.74□□□□□ -0.37
COL6A3-214ENST00000493608 TANGO6Q9C0B7 1094 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 CWC22Q9HCG8 908 aaKnown RBP12.74□□□□□ -0.37
COL6A3-214ENST00000493608 TMX2Q9Y320 296 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 RABGAP1Q9Y3P9 1069 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 RLFQ13129 1914 aa12.74□□□□□ -0.37
COL6A3-214ENST00000493608 GJB1P08034 283 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 MAPK4P31152 587 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 AAMPQ13685 434 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 COG2Q14746 738 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 GPR142Q7Z601 462 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 SMC5Q8IY18 1101 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 GTF3C2Q8WUA4 911 aaPredicted RBP12.73□□□□□ -0.37
COL6A3-214ENST00000493608 NUDT12Q9BQG2 462 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 VCPKMTQ9H867 229 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 KANSL2Q9H9L4 492 aa12.73□□□□□ -0.37
COL6A3-214ENST00000493608 TRIM6-TRIM34B2RNG4 842 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms