RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 M0R2N6 131 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 GOLGA8HP0CJ92 632 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 MYL5Q02045 173 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 GABPAQ06546 454 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 SPZ1Q9BXG8 430 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 DDX4Q9NQI0 724 aaKnown RBP24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 MYH8P13535 1937 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 KLRF2D3W0D1 207 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 STXBP3O00186 592 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 DAGLBQ8NCG7 672 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 ZNF622Q969S3 477 aaKnown RBP eCLIP24.08■■□□□ 1.456e-7■■■■■ 27
CCDC88B-208ENST00000492980 BARHL2Q9NY43 387 aa24.08■■□□□ 1.45
CCDC88B-208ENST00000492980 HEATR3Q7Z4Q2 680 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 CCDC148Q8NFR7 591 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 SMARCE1Q969G3 411 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 DHX58Q96C10 678 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 XPO4Q9C0E2 1151 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 IFNKQ9P0W0 207 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 VWA3AA6NCI4 1184 aa24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 PARP1P09874 1014 aaKnown RBP24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 LMOD1P29536 600 aaPredicted RBP24.07■■□□□ 1.44
CCDC88B-208ENST00000492980 SMC2O95347 1197 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 MCM7P33993 719 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 SCNN1DP51172 638 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 MORC3Q14149 939 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 C2CD5Q86YS7 1000 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 LRRC8AQ8IWT6 810 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 SPATA20Q8TB22 786 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 RASGRP4Q8TDF6 673 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 USP40Q9NVE5 1235 aa24.06■■□□□ 1.44
CCDC88B-208ENST00000492980 G3V3G9 751 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 DCAF8Q5TAQ9 597 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 GALNT17Q6IS24 598 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 HHIPL2Q6UWX4 724 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 FAM177A1Q8N128 213 aaPredicted RBP24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 TRIML1Q8N9V2 468 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 CPVLQ9H3G5 476 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 TPM2P07951 284 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 SLFN14P0C7P3 912 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 ARID5BQ14865 1188 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 DNTTIP2Q5QJE6 756 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 USP17L2Q6R6M4 530 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 FILIP1Q7Z7B0 1213 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 PCDHA6Q9UN73 950 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 PCDHA8Q9Y5H6 950 aa24.05■■□□□ 1.44
CCDC88B-208ENST00000492980 ATP1A3P13637 1013 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 RXRBP28702 533 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 FANCCQ00597 558 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 IL17AQ16552 155 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 SH3RF1Q7Z6J0 888 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 NEMFO60524 1076 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 STYK1Q6J9G0 422 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 CDC42EP5Q6NZY7 148 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 C4orf32Q8N8J7 132 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 TEKT1Q969V4 418 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 DBNDD1Q9H9R9 158 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 SLX4Q8IY92 1834 aa24.04■■□□□ 1.44
CCDC88B-208ENST00000492980 ZNF646O15015 1829 aaPredicted RBP24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 IGKV6D-41A0A0C4DH26 115 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 AKR1B1P15121 316 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 SMARCA1P28370 1054 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 APOBEC3HQ6NTF7 200 aaKnown RBP24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 PODNQ7Z5L7 613 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 MLKLQ8NB16 471 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 PAGE5Q96GU1 130 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 CCDC34Q96HJ3 373 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 OSBPL5Q9H0X9 879 aaPredicted RBP24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 MTMR4Q9NYA4 1195 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 IMPACTQ9P2X3 320 aa24.03■■□□□ 1.44
CCDC88B-208ENST00000492980 CCDC194A0A1B0GVG4 234 aa24.02■■□□□ 1.44
CCDC88B-208ENST00000492980 ARL6IP4Q66PJ3 421 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-208ENST00000492980 USP17L5A8MUK1 530 aa24.02■■□□□ 1.44
CCDC88B-208ENST00000492980 H0YIN7 160 aa24.02■■□□□ 1.44
CCDC88B-208ENST00000492980 KCNQ5Q9NR82 932 aa24.02■■□□□ 1.44
CCDC88B-208ENST00000492980 MYO3BQ8WXR4 1341 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 MYO1BO43795 1136 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 ZMYND12Q9H0C1 365 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 SWAP70Q9UH65 585 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 DACH1Q9UI36 760 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 SERPINB13Q9UIV8 391 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 AFMP43652 599 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 GSDMDP57764 484 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 E2F4Q16254 413 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 RRP36Q96EU6 259 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 FANCLQ9NW38 375 aa24.01■■□□□ 1.43
CCDC88B-208ENST00000492980 SCN9AQ15858 1988 aa24■■□□□ 1.43
CCDC88B-208ENST00000492980 C10orf71Q711Q0 1435 aa24■■□□□ 1.43
CCDC88B-208ENST00000492980 PDHBP11177 359 aa24■■□□□ 1.43
CCDC88B-208ENST00000492980 CRKP46108 304 aa24■■□□□ 1.43
CCDC88B-208ENST00000492980 GREB1LQ9C091 1923 aaPredicted RBP24■■□□□ 1.43
CCDC88B-208ENST00000492980 NAPAP54920 295 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 FMR1Q06787 632 aaKnown RBP eCLIP23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 TMC6Q7Z403 805 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 HOMER1Q86YM7 354 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 SHMT1P34896 483 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 LONP1P36776 959 aaKnown RBP23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 CCZ1BP86790 482 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 CCZ1P86791 482 aaPredicted RBP23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 DPYDQ12882 1025 aa23.99■■□□□ 1.43
CCDC88B-208ENST00000492980 INF2Q27J81 1249 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms