RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 CDCA5Q96FF9 252 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 GBP4Q96PP9 640 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 WRNIP1Q96S55 665 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 GLT8D2Q9H1C3 349 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 CSADQ9Y600 493 aa11.18□□□□□ -0.62
USP54-214ENST00000492357 MYPNQ86TC9 1320 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 H3BQV1 296 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 USP2O75604 605 aaPredicted RBP11.17□□□□□ -0.62
USP54-214ENST00000492357 BMP3P12645 472 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 CALML3P27482 149 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 SLC1A4P43007 532 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 PPATQ06203 517 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 RRP1BQ14684 758 aaKnown RBP11.17□□□□□ -0.62
USP54-214ENST00000492357 PFKFB3Q16875 520 aaPredicted RBP11.17□□□□□ -0.62
USP54-214ENST00000492357 SH3D19Q5HYK7 790 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 IFFO2Q5TF58 517 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 MCTP2Q6DN12 878 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 BRAPQ7Z569 592 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 CDAN1Q8IWY9 1227 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 CHURC1Q8WUH1 139 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 MTMR8Q96EF0 704 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 RRP36Q96EU6 259 aaKnown RBP11.17□□□□□ -0.62
USP54-214ENST00000492357 C8orf76Q96K31 380 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 MYL10Q9BUA6 226 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 SLC26A6Q9BXS9 759 aa11.17□□□□□ -0.62
USP54-214ENST00000492357 SEC63Q9UGP8 760 aaKnown RBP11.17□□□□□ -0.62
USP54-214ENST00000492357 PHIPQ8WWQ0 1821 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 ESYT2A0FGR8 921 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 USP17L10C9JJH3 530 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 JAK2O60674 1132 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 NDUFB10O96000 172 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 F13A1P00488 732 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 SCG2P13521 617 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 PTPRAP18433 802 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 SAFBQ15424 915 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP54-214ENST00000492357 EAPPQ56P03 285 aaPredicted RBP11.16□□□□□ -0.62
USP54-214ENST00000492357 LDLRAD1Q5T700 205 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 ERO1BQ86YB8 467 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 SRBD1Q8N5C6 995 aaKnown RBP11.16□□□□□ -0.62
USP54-214ENST00000492357 SPRYD3Q8NCJ5 442 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 ZNF280CQ8ND82 737 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 ALG1Q9BT22 464 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 BRMS1Q9HCU9 246 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 FEM1BQ9UK73 627 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 MTMR6Q9Y217 621 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 OTOFQ9HC10 1997 aa11.16□□□□□ -0.62
USP54-214ENST00000492357 PNMA6FA0A0J9YX94 578 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 SPDYE5A6NIY4 337 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 ADM5C9JUS6 153 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 GOLGA6L22H0YM25 854 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 CXCL11O14625 94 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 PLEKHA8P1O95397 391 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 RXRAP19793 462 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 INPP5BP32019 993 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 STAT2P52630 851 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 BACE1P56817 501 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 JAG1P78504 1218 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 ATP2B2Q01814 1243 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 CSPP1Q1MSJ5 1256 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 CHADLQ6NUI6 762 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 USP17L2Q6R6M4 530 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 CCDC144CPQ8IYA2 1237 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 LRRC47Q8N1G4 583 aaKnown RBP11.15□□□□□ -0.62
USP54-214ENST00000492357 SAMD3Q8N6K7 520 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 DAGLBQ8NCG7 672 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 PHKBQ93100 1093 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 DDX11Q96FC9 970 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 FOXP1Q9H334 677 aaPredicted RBP11.15□□□□□ -0.62
USP54-214ENST00000492357 CLEC11AQ9Y240 323 aa11.15□□□□□ -0.62
USP54-214ENST00000492357 A0A1W2PRG0 241 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 ZBTB5O15062 677 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 MMP1P03956 469 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 U2AF2P26368 475 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP54-214ENST00000492357 GNA11P29992 359 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 PKN1Q16512 942 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 CCDC96Q2M329 555 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 KRT40Q6A162 431 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.14□□□□□ -0.63
USP54-214ENST00000492357 STAG2Q8N3U4 1231 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 PROCA1Q8NCQ7 364 aaPredicted RBP11.14□□□□□ -0.63
USP54-214ENST00000492357 BICD2Q8TD16 824 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 FEZ1Q99689 392 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 RRAGCQ9HB90 399 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 BARHL2Q9NY43 387 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 ZDHHC9Q9Y397 364 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 SNCAIPQ9Y6H5 919 aa11.14□□□□□ -0.63
USP54-214ENST00000492357 MORC2Q9Y6X9 1032 aaPredicted RBP11.14□□□□□ -0.63
USP54-214ENST00000492357 V9GY48 417 aaPredicted RBP11.14□□□□□ -0.63
USP54-214ENST00000492357 LOC285556D6RIA3 1793 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 TRPM7Q96QT4 1865 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 VPS37CA5D8V6 355 aaPredicted RBP11.13□□□□□ -0.63
USP54-214ENST00000492357 CYTH3O43739 400 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 PPIL2Q13356 520 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 PRPF38AQ8NAV1 312 aaKnown RBP11.13□□□□□ -0.63
USP54-214ENST00000492357 TNPO1Q92973 898 aaKnown RBP11.13□□□□□ -0.63
USP54-214ENST00000492357 PHF20Q9BVI0 1012 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 GLIS2Q9BZE0 524 aaPredicted RBP11.13□□□□□ -0.63
USP54-214ENST00000492357 CFAP45Q9UL16 551 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 KCNH4Q9UQ05 1017 aa11.13□□□□□ -0.63
USP54-214ENST00000492357 AFG3L2Q9Y4W6 797 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms