RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TMC3Q7Z5M5 1100 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 ANKS4BQ8N8V4 417 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 NKD1Q969G9 470 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 TCTN2Q96GX1 697 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 ANTXR1Q9H6X2 564 aa5.56□□□□□ -1.52
CPSF3-205ENST00000489629 CWC22Q9HCG8 908 aaKnown RBP5.56□□□□□ -1.52
CPSF3-205ENST00000489629 TNFRSF10CO14798 259 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 NME1P15531 152 aaKnown RBP5.55□□□□□ -1.52
CPSF3-205ENST00000489629 ZNF165P49910 485 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 CHMP4BP1P59074 171 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 CHRNEQ04844 493 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 RAD51AP2Q09MP3 1159 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 APOBRQ0VD83 1088 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 DUSP4Q13115 394 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 ANKLE2Q86XL3 938 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 IRF2BP1Q8IU81 584 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 SPPL2CQ8IUH8 684 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 TMEM192Q8IY95 271 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 TMEM87AQ8NBN3 555 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 TOX2Q96NM4 488 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 SLC26A8Q96RN1 970 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 CD320Q9NPF0 282 aa5.55□□□□□ -1.52
CPSF3-205ENST00000489629 YBX2Q9Y2T7 364 aaKnown RBP5.55□□□□□ -1.52
CPSF3-205ENST00000489629 TMEM82A0PJX8 343 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 NFIBO00712 420 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 PSPNO60542 156 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 EFEMP2O95967 443 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 GLDCP23378 1020 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 SNX17Q15036 470 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 BBS9Q3SYG4 887 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 LCNL1Q6ZST4 164 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 ZNF655Q8N720 491 aaPredicted RBP5.54□□□□□ -1.52
CPSF3-205ENST00000489629 LINC00116Q8NCU8 138 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 SYTL4Q96C24 671 aaPredicted RBP5.54□□□□□ -1.52
CPSF3-205ENST00000489629 INTS4Q96HW7 963 aaKnown RBP5.54□□□□□ -1.52
CPSF3-205ENST00000489629 ZNF512BQ96KM6 892 aaPredicted RBP5.54□□□□□ -1.52
CPSF3-205ENST00000489629 SPON2Q9BUD6 331 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 FOXP3Q9BZS1 431 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 PRDM14Q9GZV8 571 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 ASCC2Q9H1I8 757 aaPredicted RBP5.54□□□□□ -1.52
CPSF3-205ENST00000489629 SLC6A17Q9H1V8 727 aa5.54□□□□□ -1.52
CPSF3-205ENST00000489629 ETV2O00321 342 aaPredicted RBP5.53□□□□□ -1.52
CPSF3-205ENST00000489629 SIGLEC6O43699 453 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 CLEC3AO75596 197 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 PRAMEF1O95521 474 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 TMEM253P0C7T8 217 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 MCM4P33991 863 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 FANCCQ00597 558 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 LRRFIP1Q32MZ4 808 aaKnown RBP5.53□□□□□ -1.52
CPSF3-205ENST00000489629 NLRX1Q86UT6 975 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 KIAA0825Q8IV33 1275 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 LRRC56Q8IYG6 542 aaPredicted RBP5.53□□□□□ -1.52
CPSF3-205ENST00000489629 SLC9A7Q96T83 725 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 BACH2Q9BYV9 841 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 MCOLN1Q9GZU1 580 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 TCFL5Q9UL49 500 aa5.53□□□□□ -1.52
CPSF3-205ENST00000489629 MYOCOSA0A1B0GUC4 107 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 RPL10P27635 214 aaKnown RBP5.52□□□□□ -1.53
CPSF3-205ENST00000489629 ZNF76P36508 570 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 KIR2DL1P43626 348 aaPredicted RBP5.52□□□□□ -1.53
CPSF3-205ENST00000489629 KIR2DL2P43627 348 aaPredicted RBP5.52□□□□□ -1.53
CPSF3-205ENST00000489629 PCBP3P57721 371 aaKnown RBP5.52□□□□□ -1.53
CPSF3-205ENST00000489629 TMCO4Q5TGY1 634 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 ZPBP2Q6X784 338 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 ATG14Q6ZNE5 492 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 WAPLQ7Z5K2 1190 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 MAP6Q96JE9 813 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 KRTAP4-7Q9BYR0 210 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 BCL11AQ9H165 835 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 ZNF552Q9H707 407 aaPredicted RBP5.52□□□□□ -1.53
CPSF3-205ENST00000489629 GPR160Q9UJ42 338 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 MINPP1Q9UNW1 487 aa5.52□□□□□ -1.53
CPSF3-205ENST00000489629 NPIPB6E9PJ23 425 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 NRDCO43847 1150 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 PEX10O60683 326 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 USP2O75604 605 aaPredicted RBP5.51□□□□□ -1.53
CPSF3-205ENST00000489629 SYPP08247 313 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 ACRP10323 421 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 GALK1P51570 392 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 INTS3Q68E01 1043 aaKnown RBP5.51□□□□□ -1.53
CPSF3-205ENST00000489629 SIAH1Q8IUQ4 282 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 ZSCAN18Q8TBC5 510 aaPredicted RBP5.51□□□□□ -1.53
CPSF3-205ENST00000489629 KCNN1Q92952 543 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 SLC6A18Q96N87 628 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 METTL5Q9NRN9 209 aaKnown RBP5.51□□□□□ -1.53
CPSF3-205ENST00000489629 CHST7Q9NS84 486 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 ZNRF3Q9ULT6 936 aa5.51□□□□□ -1.53
CPSF3-205ENST00000489629 SMG5Q9UPR3 1016 aaKnown RBP5.51□□□□□ -1.53
CPSF3-205ENST00000489629 TCAF2A6NFQ2 919 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 CTSKP43235 329 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 CEBPAP49715 358 aaPredicted RBP5.5□□□□□ -1.53
CPSF3-205ENST00000489629 KCNA10Q16322 511 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 ZNF394Q53GI3 561 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 USP48Q86UV5 1035 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 AMIGO3Q86WK7 504 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 TAB3Q8N5C8 712 aaPredicted RBP5.5□□□□□ -1.53
CPSF3-205ENST00000489629 HHIPL1Q96JK4 782 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 CRTAC1Q9NQ79 661 aa5.5□□□□□ -1.53
CPSF3-205ENST00000489629 PRR13Q9NZ81 148 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms