RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 F5H6K3 240 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 NDUFB10O96000 172 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 GOLGA8HP0CJ92 632 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 XBP1P17861 261 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 PTMSP20962 102 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 U2AF2P26368 475 aaKnown RBP eCLIP13.28□□□□□ -0.28
C9orf3-220ENST00000489318 ECE1P42892 770 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 KLRC3Q07444 240 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 TRIM29Q14134 588 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 SLFN13Q68D06 897 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 FERMT3Q86UX7 667 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 PNMA8AQ86V59 439 aaPredicted RBP13.28□□□□□ -0.28
C9orf3-220ENST00000489318 SULF1Q8IWU6 871 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 SCYL3Q8IZE3 742 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 KLRG1Q96E93 195 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 PHF20Q9BVI0 1012 aa13.28□□□□□ -0.28
C9orf3-220ENST00000489318 BAZ2BQ9UIF8 2168 aaKnown RBP13.28□□□□□ -0.28
C9orf3-220ENST00000489318 UTRNP46939 3433 aa13.27□□□□□ -0.28
C9orf3-220ENST00000489318 KIF28PB7ZC32 967 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 ADM5C9JUS6 153 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 GOLGA6L22H0YM25 854 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 ATP2B2Q01814 1243 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 GUCY1B3Q02153 619 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 NPY5RQ15761 445 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 ATL3Q6DD88 541 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 OTUD7BQ6GQQ9 843 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 BTNL9Q6UXG8 535 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 USP48Q86UV5 1035 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.27□□□□□ -0.29
C9orf3-220ENST00000489318 ACER1Q8TDN7 264 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 VCPKMTQ9H867 229 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 GOPCQ9HD26 462 aa13.27□□□□□ -0.29
C9orf3-220ENST00000489318 FRMPD2Q68DX3 1309 aaPredicted RBP13.27□□□□□ -0.29
C9orf3-220ENST00000489318 PLA2G6O60733 806 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 ELP1O95163 1332 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 INPP5BP32019 993 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 SLC1A4P43007 532 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 FOSBP53539 338 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 DNM1Q05193 864 aaKnown RBP13.26□□□□□ -0.29
C9orf3-220ENST00000489318 RLFQ13129 1914 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 CCDC96Q2M329 555 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 KRT26Q7Z3Y9 468 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 RBBP6Q7Z6E9 1792 aaKnown RBP13.26□□□□□ -0.29
C9orf3-220ENST00000489318 DAGLBQ8NCG7 672 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 CCDC148Q8NFR7 591 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 RRP36Q96EU6 259 aaKnown RBP13.26□□□□□ -0.29
C9orf3-220ENST00000489318 CHAMP1Q96JM3 812 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 WRNIP1Q96S55 665 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 WDR18Q9BV38 432 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 KIAA1683Q9H0B3 1180 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 FOXP1Q9H334 677 aaPredicted RBP13.26□□□□□ -0.29
C9orf3-220ENST00000489318 BARHL2Q9NY43 387 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 VPS54Q9P1Q0 977 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.26□□□□□ -0.29
C9orf3-220ENST00000489318 MTMR7Q9Y216 660 aa13.26□□□□□ -0.29
C9orf3-220ENST00000489318 hCG_1642624A0A1W2PR95 340 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 ESYT2A0FGR8 921 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 STXBP3O00186 592 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 BMP3P12645 472 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 KRT85P78386 507 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 MAP3K11Q16584 847 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 MYSM1Q5VVJ2 828 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 PRAMEF18Q5VWM3 479 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 WWC2Q6AWC2 1192 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 MCTP1Q6DN14 999 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 PPP1R18Q6NYC8 613 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 DIS3L2Q8IYB7 885 aaKnown RBP13.25□□□□□ -0.29
C9orf3-220ENST00000489318 LPAR1Q92633 364 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 TNFRSF25Q93038 417 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 CDCA5Q96FF9 252 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 PIGSQ96S52 555 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 GLIS2Q9BZE0 524 aaPredicted RBP13.25□□□□□ -0.29
C9orf3-220ENST00000489318 CPVLQ9H3G5 476 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 JMJD4Q9H9V9 463 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 LMBRD1Q9NUN5 540 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 CNPY2Q9Y2B0 182 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 A0A0G2JMZ2 1700 aa13.25□□□□□ -0.29
C9orf3-220ENST00000489318 USP2O75604 605 aaPredicted RBP13.24□□□□□ -0.29
C9orf3-220ENST00000489318 VEGFAP15692 232 aaPredicted RBP13.24□□□□□ -0.29
C9orf3-220ENST00000489318 PTPRAP18433 802 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 SAFBQ15424 915 aaKnown RBP eCLIP13.24□□□□□ -0.29
C9orf3-220ENST00000489318 KIAA1755Q5JYT7 1200 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 TTBK2Q6IQ55 1244 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 GALNT17Q6IS24 598 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 TYW1BQ6NUM6 668 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 FAM173BQ6P4H8 233 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 KCTD1Q719H9 257 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 NOSTRINQ8IVI9 506 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 ADGRF4Q8IZF3 695 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 C12orf42Q96LP6 360 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 UBA5Q9GZZ9 404 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 AS3MTQ9HBK9 375 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 GPCPD1Q9NPB8 672 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 SEC63Q9UGP8 760 aaKnown RBP13.24□□□□□ -0.29
C9orf3-220ENST00000489318 KCNJ14Q9UNX9 436 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 SRCAPQ6ZRS2 3230 aa13.24□□□□□ -0.29
C9orf3-220ENST00000489318 PNMA6FA0A0J9YX94 578 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 M0R2N6 131 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 ZBTB5O15062 677 aa13.23□□□□□ -0.29
C9orf3-220ENST00000489318 WDR46O15213 610 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms