RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 PICK1Q9NRD5 415 aa11.57□□□□□ -0.56
USP11-211ENST00000489111 ADM5C9JUS6 153 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 F5H6K3 240 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 FIBPO43427 364 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 NDUFB10O96000 172 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 MMP1P03956 469 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 KIF23Q02241 960 aaPredicted RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 DNM1Q05193 864 aaKnown RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 KLRC3Q07444 240 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 IKQ13123 557 aaPredicted RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 PKN1Q16512 942 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 PRAMEF18Q5VWM3 479 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 KCTD1Q719H9 257 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 HEATR3Q7Z4Q2 680 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 PNMA8AQ86V59 439 aaPredicted RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 HOMER1Q86YM7 354 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 CCDC148Q8NFR7 591 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 ZNF396Q96N95 335 aaPredicted RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 TAF1DQ9H5J8 278 aaPredicted RBP11.56□□□□□ -0.56
USP11-211ENST00000489111 GJB4Q9NTQ9 266 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 VPS54Q9P1Q0 977 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 CNPY2Q9Y2B0 182 aa11.56□□□□□ -0.56
USP11-211ENST00000489111 CALML3P27482 149 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 NF2P35240 595 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 SIAH1Q8IUQ4 282 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 DIS3L2Q8IYB7 885 aaKnown RBP11.55□□□□□ -0.56
USP11-211ENST00000489111 SCYL3Q8IZE3 742 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 FAM177A1Q8N128 213 aaPredicted RBP11.55□□□□□ -0.56
USP11-211ENST00000489111 ACER1Q8TDN7 264 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 CCDC12Q8WUD4 166 aaPredicted RBP11.55□□□□□ -0.56
USP11-211ENST00000489111 CHAMP1Q96JM3 812 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 UBA5Q9GZZ9 404 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 CPVLQ9H3G5 476 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 VAT1LQ9HCJ6 419 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 SH3GLB2Q9NR46 395 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.55□□□□□ -0.56
USP11-211ENST00000489111 KCNJ14Q9UNX9 436 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 TMX2Q9Y320 296 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 SBF1O95248 1867 aa11.55□□□□□ -0.56
USP11-211ENST00000489111 A0A1W2PRG0 241 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 hCG_1984214I3L0E3 225 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 CYTH3O43739 400 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 BMP3P12645 472 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 INPP5BP32019 993 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 KRT2P35908 639 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 ECE1P42892 770 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 NLRP5P59047 1200 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 ZYXQ15942 572 aaKnown RBP11.54□□□□□ -0.56
USP11-211ENST00000489111 SLC35G1Q2M3R5 365 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 ATL3Q6DD88 541 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 FAM173BQ6P4H8 233 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 NOSTRINQ8IVI9 506 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 SPICE1Q8N0Z3 855 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 ZNF713Q8N859 430 aaPredicted RBP11.54□□□□□ -0.56
USP11-211ENST00000489111 GPKOWQ92917 476 aaPredicted RBP eCLIP11.54□□□□□ -0.56
USP11-211ENST00000489111 PIGSQ96S52 555 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 SCAND2PQ9GZW5 306 aaPredicted RBP11.54□□□□□ -0.56
USP11-211ENST00000489111 FOXP1Q9H334 677 aaPredicted RBP11.54□□□□□ -0.56
USP11-211ENST00000489111 RIOX1Q9H6W3 641 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 VCPKMTQ9H867 229 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 AS3MTQ9HBK9 375 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 ZNF112Q9UJU3 913 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 CFAP45Q9UL16 551 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 GREB1LQ9C091 1923 aaPredicted RBP11.54□□□□□ -0.56
USP11-211ENST00000489111 SSC5DA1L4H1 1573 aa11.54□□□□□ -0.56
USP11-211ENST00000489111 KIF28PB7ZC32 967 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 PPP1R12BO60237 982 aaPredicted RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 PRPF40AO75400 957 aaKnown RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 SLC16A2P36021 539 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 IREB2P48200 963 aaKnown RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 NAPAP54920 295 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 PRKG1Q13976 671 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 SKOR2Q2VWA4 1001 aaPredicted RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 WWC2Q6AWC2 1192 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 TTBK2Q6IQ55 1244 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 CCDC84Q86UT8 332 aaPredicted RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 ADGRF4Q8IZF3 695 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 TMEM87AQ8NBN3 555 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 SPATA32Q96LK8 384 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 NUP88Q99567 741 aaPredicted RBP11.53□□□□□ -0.56
USP11-211ENST00000489111 PHF20Q9BVI0 1012 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 GDPD2Q9HCC8 539 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 BARHL2Q9NY43 387 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 CLEC11AQ9Y240 323 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 SRCAPQ6ZRS2 3230 aa11.53□□□□□ -0.56
USP11-211ENST00000489111 PNMA6FA0A0J9YX94 578 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 BTBD18B2RXH4 712 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 TMEM232C9JQI7 657 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 STXBP3O00186 592 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 ZBTB5O15062 677 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 U2AF2P26368 475 aaKnown RBP eCLIP11.52□□□□□ -0.57
USP11-211ENST00000489111 STAT2P52630 851 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 USP14P54578 494 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 TTLL12Q14166 644 aaPredicted RBP11.52□□□□□ -0.57
USP11-211ENST00000489111 NOL9Q5SY16 702 aaKnown RBP11.52□□□□□ -0.57
USP11-211ENST00000489111 FAM83BQ5T0W9 1011 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 SYDE2Q5VT97 1194 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 MYSM1Q5VVJ2 828 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 GALNT17Q6IS24 598 aa11.52□□□□□ -0.57
USP11-211ENST00000489111 PPP1R18Q6NYC8 613 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms