RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 TMEM87BQ96K49 555 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 MTA3Q9BTC8 594 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 LY9Q9HBG7 655 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 AGTPBP1Q9UPW5 1226 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 ERICH2A1L162 156 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 NDUFB10O96000 172 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 RUFY3Q7L099 469 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 LPAR1Q92633 364 aa22.6■■□□□ 1.21
CCM2-216ENST00000488727 WTAPQ15007 396 aa22.59■■□□□ 1.21
CCM2-216ENST00000488727 ANKRD23Q86SG2 305 aa22.59■■□□□ 1.21
CCM2-216ENST00000488727 CHMP4CQ96CF2 233 aa22.59■■□□□ 1.21
CCM2-216ENST00000488727 PARP14Q460N5 1801 aa22.59■■□□□ 1.21
CCM2-216ENST00000488727 REM2Q8IYK8 340 aaPredicted RBP22.58■■□□□ 1.21
CCM2-216ENST00000488727 PNMA1Q8ND90 353 aa22.58■■□□□ 1.21
CCM2-216ENST00000488727 NUP88Q99567 741 aaPredicted RBP22.58■■□□□ 1.21
CCM2-216ENST00000488727 KAT14Q9H8E8 782 aa22.58■■□□□ 1.21
CCM2-216ENST00000488727 MTMR7Q9Y216 660 aa22.58■■□□□ 1.21
CCM2-216ENST00000488727 ZDHHC9Q9Y397 364 aa22.58■■□□□ 1.21
CCM2-216ENST00000488727 CYP46A1Q9Y6A2 500 aa22.58■■□□□ 1.21
CCM2-216ENST00000488727 RLFQ13129 1914 aa22.57■■□□□ 1.2
CCM2-216ENST00000488727 GOLGA6L3A6NEY3 463 aa22.57■■□□□ 1.2
CCM2-216ENST00000488727 PDHXO00330 501 aa22.57■■□□□ 1.2
CCM2-216ENST00000488727 SLFN13Q68D06 897 aa22.57■■□□□ 1.2
CCM2-216ENST00000488727 PKP1Q13835 747 aa22.57■■□□□ 1.2
CCM2-216ENST00000488727 RPAP3Q9H6T3 665 aaPredicted RBP22.57■■□□□ 1.2
CCM2-216ENST00000488727 WDR46O15213 610 aaKnown RBP22.56■■□□□ 1.2
CCM2-216ENST00000488727 HOXA7P31268 230 aaPredicted RBP22.56■■□□□ 1.2
CCM2-216ENST00000488727 LIFRP42702 1097 aa22.56■■□□□ 1.2
CCM2-216ENST00000488727 FAM83BQ5T0W9 1011 aa22.56■■□□□ 1.2
CCM2-216ENST00000488727 Q6ZUG5 572 aa22.56■■□□□ 1.2
CCM2-216ENST00000488727 PDHBP11177 359 aa22.55■■□□□ 1.2
CCM2-216ENST00000488727 GMCL1Q96IK5 515 aa22.55■■□□□ 1.2
CCM2-216ENST00000488727 GZF1Q9H116 711 aaPredicted RBP22.55■■□□□ 1.2
CCM2-216ENST00000488727 SLC45A1Q9Y2W3 748 aa22.55■■□□□ 1.2
CCM2-216ENST00000488727 SNHG28P0DPA3 235 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 KLHL40Q2TBA0 621 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 CATSPERGQ6ZRH7 1159 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 SGMS1Q86VZ5 419 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 AGXT2Q9BYV1 514 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L15C9J2P7 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L13C9JLJ4 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L11C9JVI0 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L18D6R9N7 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L22D6RA61 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L17D6RBQ6 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L19D6RCP7 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L20D6RJB6 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 BRD1O95696 1058 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 CYP2C8P10632 490 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 USP17L24Q0WX57 530 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 OTUD7BQ6GQQ9 843 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 FBXL16Q8N461 479 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 JMYQ8N9B5 988 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 TANGO6Q9C0B7 1094 aa22.54■■□□□ 1.2
CCM2-216ENST00000488727 ASCC2Q9H1I8 757 aaPredicted RBP22.54■■□□□ 1.2
CCM2-216ENST00000488727 ZCCHC17Q9NP64 241 aaKnown RBP22.54■■□□□ 1.2
CCM2-216ENST00000488727 BMP3P12645 472 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 SLC1A4P43007 532 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 TROAPQ12815 778 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 TOB2Q14106 344 aaPredicted RBP22.53■■□□□ 1.2
CCM2-216ENST00000488727 KCTD1Q719H9 257 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 TMTC2Q8N394 836 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 BRF1Q92994 677 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 MYL10Q9BUA6 226 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 RNF186Q9NXI6 227 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 BRPF3Q9ULD4 1205 aa22.53■■□□□ 1.2
CCM2-216ENST00000488727 FGD1P98174 961 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 MAP2K1Q02750 393 aaPredicted RBP22.52■■□□□ 1.2
CCM2-216ENST00000488727 PABPC4Q13310 644 aaKnown RBP eCLIP22.52■■□□□ 1.2
CCM2-216ENST00000488727 TAF1CQ15572 869 aaPredicted RBP22.52■■□□□ 1.2
CCM2-216ENST00000488727 NFXL1Q6ZNB6 911 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 ZNF654Q8IZM8 581 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 DCAF4Q8WV16 495 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 PDRG1Q9NUG6 133 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 FBXO28Q9NVF7 368 aa22.52■■□□□ 1.2
CCM2-216ENST00000488727 CCDC69A6NI79 296 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 ALDH1A1P00352 501 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 FRMPD2Q68DX3 1309 aaPredicted RBP22.51■■□□□ 1.19
CCM2-216ENST00000488727 TRPA1O75762 1119 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 GOLGA8HP0CJ92 632 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 IRX3P78415 501 aaPredicted RBP22.51■■□□□ 1.19
CCM2-216ENST00000488727 ZNF543Q08ER8 600 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 APOBRQ0VD83 1088 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 CCDC96Q2M329 555 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 MCTP1Q6DN14 999 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 CATIPQ7Z7H3 387 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 P2RX7Q99572 595 aaKnown RBP22.51■■□□□ 1.19
CCM2-216ENST00000488727 LMBRD1Q9NUN5 540 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 WBP1LQ9NX94 342 aa22.51■■□□□ 1.19
CCM2-216ENST00000488727 FLOT1O75955 427 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 OSBPP22059 807 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 AK2P54819 239 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 CRHR2Q13324 411 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 APOA5Q6Q788 366 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 POTEEQ6S8J3 1075 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 RAB11FIP4Q86YS3 637 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 PARK7Q99497 189 aaKnown RBP22.5■■□□□ 1.19
CCM2-216ENST00000488727 R3HDMLQ9H3Y0 253 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 PNMA3Q9UL41 463 aa22.5■■□□□ 1.19
CCM2-216ENST00000488727 LIMCH1Q9UPQ0 1083 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms