RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 CKAP2LQ8IYA6 745 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 LINC00301Q8NCQ3 95 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 FAM151AQ8WW52 585 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 TMEM47Q9BQJ4 181 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 FUCA2Q9BTY2 467 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 GPRC5DQ9NZD1 345 aa14.01□□□□□ -0.17
HDAC6-230ENST00000488543 BAZ2BQ9UIF8 2168 aaKnown RBP14□□□□□ -0.17
HDAC6-230ENST00000488543 hCG_1642624A0A1W2PR95 340 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 MPHOSPH10O00566 681 aaKnown RBP14□□□□□ -0.17
HDAC6-230ENST00000488543 YEATS4O95619 227 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 HIRAP54198 1017 aaPredicted RBP14□□□□□ -0.17
HDAC6-230ENST00000488543 JAG1P78504 1218 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 KIF4BQ2VIQ3 1234 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 EHD4Q9H223 541 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 V9GY48 417 aaPredicted RBP14□□□□□ -0.17
HDAC6-230ENST00000488543 H7C1D1 291 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 SOCS7O14512 581 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 GDF11O95390 407 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 RASA3Q14644 834 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 PRAMEF18Q5VWM3 479 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 HACL1Q9UJ83 578 aa14□□□□□ -0.17
HDAC6-230ENST00000488543 GOLGA6L4A6NEF3 574 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 BTBD18B2RXH4 712 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 SLC35G1Q2M3R5 365 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 ANO1Q5XXA6 986 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 FOXP4Q8IVH2 680 aaPredicted RBP13.99□□□□□ -0.17
HDAC6-230ENST00000488543 DIS3L2Q8IYB7 885 aaKnown RBP13.99□□□□□ -0.17
HDAC6-230ENST00000488543 SWAP70Q9UH65 585 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 ATRNL1Q5VV63 1379 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 IGKV6D-41A0A0C4DH26 115 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 CERKLQ49MI3 558 aaPredicted RBP13.99□□□□□ -0.17
HDAC6-230ENST00000488543 STAG2Q8N3U4 1231 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 BICD2Q8TD16 824 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 GOLPH3LQ9H4A5 285 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 DACT1Q9NYF0 836 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 PGAP2Q9UHJ9 254 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 MAD2L2Q9UI95 211 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 PCDHA7Q9UN72 937 aa13.99□□□□□ -0.17
HDAC6-230ENST00000488543 LETM1O95202 739 aaPredicted RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 KIF5BP33176 963 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 AKAP17AQ02040 695 aaKnown RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 TATDN1Q6P1N9 297 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 NOSTRINQ8IVI9 506 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 OXER1Q8TDS5 423 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 PHF20Q9BVI0 1012 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 TRIM34Q9BYJ4 488 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 VPS54Q9P1Q0 977 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 DICER1Q9UPY3 1922 aaKnown RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 NR1I2O75469 434 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 STK38Q15208 465 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 PTPAQ15257 358 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 ANGEL2Q5VTE6 544 aaKnown RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 DLK2Q6UY11 383 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 METTL16Q86W50 562 aaKnown RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 FOXP1Q9H334 677 aaPredicted RBP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.98□□□□□ -0.17
HDAC6-230ENST00000488543 MTMR4Q9NYA4 1195 aa13.98□□□□□ -0.17
HDAC6-230ENST00000488543 PALM3A6NDB9 673 aaPredicted RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 ATP2B2Q01814 1243 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 SAFBQ15424 915 aaKnown RBP eCLIP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 NPY5RQ15761 445 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 FKBP1CQ5VVH2 108 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 FAM83AQ86UY5 434 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 LUZP1Q86V48 1076 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 CCAR1Q8IX12 1150 aaKnown RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 KCNG4Q8TDN1 519 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 DDX19AQ9NUU7 478 aaKnown RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 CLIP2Q9UDT6 1046 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 SPTLC2O15270 562 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 GOLGA8HP0CJ92 632 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 VEGFAP15692 232 aaPredicted RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 ME1P48163 572 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 TOB1P50616 345 aaPredicted RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 NR5A1Q13285 461 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 GNL2Q13823 731 aaKnown RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 LRRC47Q8N1G4 583 aaKnown RBP13.97□□□□□ -0.17
HDAC6-230ENST00000488543 TEPSINQ96N21 525 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 NUP62CLQ9H1M0 184 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 DEFB129Q9H1M3 183 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 KCNF1Q9H3M0 494 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 CLSTN2Q9H4D0 955 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 PYCARDQ9ULZ3 195 aa13.97□□□□□ -0.17
HDAC6-230ENST00000488543 MYH4Q9Y623 1939 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 TOP1P11387 765 aaKnown RBP13.96□□□□□ -0.17
HDAC6-230ENST00000488543 SEPT2Q15019 361 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 SLC39A14Q15043 492 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 SF3A1Q15459 793 aaKnown RBP13.96□□□□□ -0.17
HDAC6-230ENST00000488543 PFKFB3Q16875 520 aaPredicted RBP13.96□□□□□ -0.17
HDAC6-230ENST00000488543 ENGASEQ8NFI3 743 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 PIBF1Q8WXW3 757 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 CPVLQ9H3G5 476 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 FZD1Q9UP38 647 aa13.96□□□□□ -0.17
HDAC6-230ENST00000488543 A0A087WWV3 80 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 A0A1W2PQ27 194 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 A0A1W2PQ64 194 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 A0A1W2PQD8 194 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 SCG2P13521 617 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 UVSSAQ2YD98 709 aa13.96□□□□□ -0.18
HDAC6-230ENST00000488543 AXDND1Q5T1B0 1012 aaPredicted RBP13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms