RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	MB21D1	Q8N884	522 aa		28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	NKX2-3	Q8TAU0	364 aa		28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	TRIB2	Q92519	343 aa		28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	MOV10L1	Q9BXT6	1211 aa	Known RBP	28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	SPATC1L	Q9H0A9	340 aa		28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	ANAPC4	Q9UJX5	808 aa		28.14	■■■□□ 2.1
RNF38-208	ENST00000488058	RANBP6	O60518	1105 aa	Known RBP	28.13	■■■□□ 2.09
RNF38-208	ENST00000488058	HAND2	P61296	217 aa		28.13	■■■□□ 2.09
RNF38-208	ENST00000488058	TRIM32	Q13049	653 aa		28.13	■■■□□ 2.09
RNF38-208	ENST00000488058	TTC22	Q5TAA0	569 aa		28.13	■■■□□ 2.09
RNF38-208	ENST00000488058	ZKSCAN1	P17029	563 aa	Predicted RBP	28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	PTPRE	P23469	700 aa		28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	MAP2K5	Q13163	448 aa		28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	RRP12	Q5JTH9	1297 aa	Known RBP	28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	SHISA4	Q96DD7	197 aa		28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	APBA2	Q99767	749 aa		28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	ISY1	Q9ULR0	285 aa	Known RBP	28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	TACC3	Q9Y6A5	838 aa		28.12	■■■□□ 2.09
RNF38-208	ENST00000488058	XRCC5	P13010	732 aa	Known RBP	28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	GJA8	P48165	433 aa		28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	NCAPG2	Q86XI2	1143 aa		28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	U2AF1L4	Q8WU68	220 aa	Known RBP	28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	USP6NL	Q92738	828 aa		28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	DEFB118	Q96PH6	123 aa		28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	PPP1R9A	Q9ULJ8	1098 aa		28.11	■■■□□ 2.09
RNF38-208	ENST00000488058	SLC15A5	A6NIM6	579 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	GSPT1	P15170	499 aa	Known RBP	28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	ERCC3	P19447	782 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	CCL14	Q16627	93 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	MKL1	Q969V6	931 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	CHMP4C	Q96CF2	233 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	28.1	■■■□□ 2.09	9e-6	■■□□□ 13.2
RNF38-208	ENST00000488058	STX8	Q9UNK0	236 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	ZMYM6	O95789	1325 aa		28.1	■■■□□ 2.09
RNF38-208	ENST00000488058	NMT2	O60551	498 aa		28.09	■■■□□ 2.09
RNF38-208	ENST00000488058	TMEM132B	Q14DG7	1078 aa		28.09	■■■□□ 2.09
RNF38-208	ENST00000488058	TRMT44	Q8IYL2	757 aa	Known RBP	28.09	■■■□□ 2.09
RNF38-208	ENST00000488058	SLF1	Q9BQI6	1058 aa		28.09	■■■□□ 2.09
RNF38-208	ENST00000488058	ORC4	O43929	436 aa		28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	SGPL1	O95470	568 aa		28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	GRB14	Q14449	540 aa		28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	SLFN13	Q68D06	897 aa		28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	SHCBP1	Q8NEM2	672 aa		28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	HMX1	Q9NP08	348 aa	Predicted RBP	28.08	■■■□□ 2.09
RNF38-208	ENST00000488058	VWA5A	O00534	786 aa		28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	PRKAR2A	P13861	404 aa	Known RBP	28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	PPP4R3B	Q5MIZ7	849 aa		28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	GMCL1P1	Q8NEA9	526 aa		28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	PAK6	Q9NQU5	681 aa	Predicted RBP	28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	SYNPO2	Q9UMS6	1093 aa		28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	ADAMTS5	Q9UNA0	930 aa		28.07	■■■□□ 2.08
RNF38-208	ENST00000488058	TNRC18	O15417	2968 aa	Predicted RBP	28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	TFRC	P02786	760 aa	Known RBP	28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	DPP9	Q86TI2	863 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	KIFC2	Q96AC6	838 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	MROH8	Q9H579	483 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	IL17RB	Q9NRM6	502 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	MTMR7	Q9Y216	660 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	CTDP1	Q9Y5B0	961 aa	Predicted RBP	28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	RPTOR	Q8N122	1335 aa		28.06	■■■□□ 2.08
RNF38-208	ENST00000488058	ADORA2A	P29274	412 aa		28.05	■■■□□ 2.08
RNF38-208	ENST00000488058	MFSD6	Q6ZSS7	791 aa		28.05	■■■□□ 2.08
RNF38-208	ENST00000488058	LAMA4	Q16363	1823 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	ZNF213	O14771	459 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	STRN	O43815	780 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	SLC25A27	O95847	323 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	FGR	P09769	529 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	BMP3	P12645	472 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	STAT3	P40763	770 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	SLC4A3	P48751	1232 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	AKNAD1	Q5T1N1	836 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	TBC1D10C	Q8IV04	446 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	PRPF38A	Q8NAV1	312 aa	Known RBP	28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	NPLOC4	Q8TAT6	608 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	NBPF3	Q9H094	633 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	FEM1B	Q9UK73	627 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	ZNF236	Q9UL36	1845 aa		28.04	■■■□□ 2.08
RNF38-208	ENST00000488058	CACNB2	Q08289	660 aa	Predicted RBP	28.03	■■■□□ 2.08
RNF38-208	ENST00000488058	RIOX2	Q8IUF8	465 aa		28.03	■■■□□ 2.08
RNF38-208	ENST00000488058	FLRT1	Q9NZU1	646 aa		28.03	■■■□□ 2.08
RNF38-208	ENST00000488058	PDE4DIP	Q5VU43	2346 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	FARP2	O94887	1054 aa	Predicted RBP	28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	MCC	P23508	829 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	SLC1A4	P43007	532 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	IK	Q13123	557 aa	Predicted RBP	28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	MAP3K21	Q5TCX8	1036 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	MFSD14C	Q5VZR4	134 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	CPXCR1	Q8N123	301 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	REPS2	Q8NFH8	660 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	STAG1	Q8WVM7	1258 aa		28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	RNF41	Q9H4P4	317 aa	Predicted RBP	28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	ZNF214	Q9UL59	606 aa	Predicted RBP	28.02	■■■□□ 2.08
RNF38-208	ENST00000488058	TMEM232	C9JQI7	657 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	ZBED4	O75132	1171 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	HOXC6	P09630	235 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	FCER1A	P12319	257 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	DSCC1	Q9BVC3	393 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	IL25	Q9H293	177 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	BRCA2	P51587	3418 aa		28.01	■■■□□ 2.07
RNF38-208	ENST00000488058	PC	P11498	1178 aa	Known RBP	28	■■■□□ 2.07

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms