RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 ZNF408Q9H9D4 720 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 CIZ1Q9ULV3 898 aaPredicted RBP12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 MTMR7Q9Y216 660 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 STK36Q9NRP7 1315 aa12.27□□□□□ -0.45
HLA-DMB-261ENST00000487996 PALM3A6NDB9 673 aaPredicted RBP12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 C19orf81C9J6K1 198 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 TRAF5O00463 557 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 RAD21O60216 631 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 GJB2P29033 226 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 ZNF543Q08ER8 600 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 CCDC96Q2M329 555 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 ERO1BQ86YB8 467 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 SMC1BQ8NDV3 1235 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 RNF26Q9BY78 433 aaPredicted RBP12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 GBA2Q9HCG7 927 aaPredicted RBP12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 FAM217BQ9NTX9 383 aaPredicted RBP12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 MAD2L2Q9UI95 211 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 TRPM7Q96QT4 1865 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 OTOFQ9HC10 1997 aa12.26□□□□□ -0.45
HLA-DMB-261ENST00000487996 A0A1W2PRG0 241 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 KLRF2D3W0D1 207 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 CELF2O95319 508 aaKnown RBP12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 FMNL1O95466 1100 aaPredicted RBP12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 NDUFB10O96000 172 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 PPATQ06203 517 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 NTRK3Q16288 839 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 USP17L2Q6R6M4 530 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 DLK2Q6UY11 383 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 RGS22Q8NE09 1264 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 ACER1Q8TDN7 264 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 SPZ1Q9BXG8 430 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 ORC3Q9UBD5 711 aaPredicted RBP12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 ISY1Q9ULR0 285 aaKnown RBP12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 SNCAIPQ9Y6H5 919 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 ZHX2Q9Y6X8 837 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 DEXIO95424 95 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 CTDNEP1O95476 244 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 BMP3P12645 472 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 ECE1P42892 770 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 APLP1P51693 650 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 BACE1P56817 501 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 NUCB2P80303 420 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 LDLRAD1Q5T700 205 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 IFFO2Q5TF58 517 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 SLC26A6Q9BXS9 759 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 FZD1Q9UP38 647 aa12.25□□□□□ -0.45
HLA-DMB-261ENST00000487996 MYH6P13533 1939 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 SPDYE5A6NIY4 337 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 WDR46O15213 610 aaKnown RBP12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 PRPF3O43395 683 aaKnown RBP12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 JAK2O60674 1132 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 ITGBL1O95965 494 aaPredicted RBP12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 XBP1P17861 261 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 SPP2Q13103 211 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 MTMR2Q13614 643 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 SPDYE1Q8NFV5 336 aaPredicted RBP12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 DDX11Q96FC9 970 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 TMOD4Q9NZQ9 345 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 CHMP5Q9NZZ3 219 aa12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 SEC63Q9UGP8 760 aaKnown RBP12.24□□□□□ -0.45
HLA-DMB-261ENST00000487996 FRMPD2Q68DX3 1309 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 CNTNAP5Q8WYK1 1306 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 PHIPQ8WWQ0 1821 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 PLA2G6O60733 806 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 PLEKHA8P1O95397 391 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 HTRA3P83110 453 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 IKQ13123 557 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 PPIL2Q13356 520 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 TRIM29Q14134 588 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 LARP1BQ659C4 914 aaKnown RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 FAM177A1Q8N128 213 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 STAG2Q8N3U4 1231 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 SRBD1Q8N5C6 995 aaKnown RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 CHURC1Q8WUH1 139 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 PHKBQ93100 1093 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 SLC10A4Q96EP9 437 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 RRP36Q96EU6 259 aaKnown RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 C12orf42Q96LP6 360 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 ELP3Q9H9T3 547 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 AFG3L2Q9Y4W6 797 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 TRIM75PA6NK02 468 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 CXCL11O14625 94 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 GOLGA8HP0CJ92 632 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 DDIT3P35638 169 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 STAT2P52630 851 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 FUT2Q10981 343 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 ZYXQ15942 572 aaKnown RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 KCTD1Q719H9 257 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 NBPF11Q86T75 865 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 CCDC84Q86UT8 332 aaPredicted RBP12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 FAM160B2Q86V87 743 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 SPICE1Q8N0Z3 855 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 CCDC82Q8N4S0 544 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 RIOX1Q9H6W3 641 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 GPCPD1Q9NPB8 672 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 FEM1BQ9UK73 627 aa12.23□□□□□ -0.45
HLA-DMB-261ENST00000487996 BAZ2BQ9UIF8 2168 aaKnown RBP12.22□□□□□ -0.45
HLA-DMB-261ENST00000487996 WDR33Q9C0J8 1336 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms