RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 PARP14Q460N5 1801 aa23.46■■□□□ 1.35
SMPDL3A-202ENST00000487215 TRIM43Q96BQ3 446 aaPredicted RBP23.46■■□□□ 1.35
SMPDL3A-202ENST00000487215 CCDC17Q96LX7 622 aa23.46■■□□□ 1.35
SMPDL3A-202ENST00000487215 CDK8P49336 464 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 C12orf60Q5U649 245 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 MMP19Q99542 508 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 CDX2Q99626 313 aaPredicted RBP23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 BCL11AQ9H165 835 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 XPNPEP3Q9NQH7 507 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 FBXO28Q9NVF7 368 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 PAG1Q9NWQ8 432 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 NRBP1Q9UHY1 535 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 ADAMTS5Q9UNA0 930 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 PHF24Q9UPV7 400 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 MYH8P13535 1937 aa23.45■■□□□ 1.34
SMPDL3A-202ENST00000487215 PGK2P07205 417 aa23.44■■□□□ 1.34
SMPDL3A-202ENST00000487215 TLE2Q04725 743 aa23.44■■□□□ 1.34
SMPDL3A-202ENST00000487215 BOLA2Q9H3K6 86 aa23.44■■□□□ 1.34
SMPDL3A-202ENST00000487215 SEMA6BQ9H3T3 888 aa23.44■■□□□ 1.34
SMPDL3A-202ENST00000487215 USP17L12C9JPN9 530 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 USP17L21D6R901 530 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 CHGBP05060 677 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 RARBP10826 455 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 EEF2P13639 858 aaKnown RBP23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 SMAD3P84022 425 aaKnown RBP23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 C16orf86Q6ZW13 317 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 RIOX2Q8IUF8 465 aa23.43■■□□□ 1.34
SMPDL3A-202ENST00000487215 ROBO3Q96MS0 1386 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 BAZ2AQ9UIF9 1905 aaKnown RBP23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 ITGB8P26012 769 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 ZNF792Q3KQV3 632 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 SIRT2Q8IXJ6 389 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 RPAP2Q8IXW5 612 aaPredicted RBP23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 AMOTL1Q8IY63 956 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 TINF2Q9BSI4 451 aa23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 TTYH1Q9H313 450 aaPredicted RBP23.42■■□□□ 1.34
SMPDL3A-202ENST00000487215 COL11A1P12107 1806 aaPredicted RBP23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 VWA5AO00534 786 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 HMMRO75330 724 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 PGK1P00558 417 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 TAL1P17542 331 aaPredicted RBP23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 ATP5JP18859 108 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 KCTD2Q14681 263 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 RNF180Q86T96 592 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 KANSL2Q9H9L4 492 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 ZNF214Q9UL59 606 aaPredicted RBP23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 PPP1R9AQ9ULJ8 1098 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 DIS3Q9Y2L1 958 aaKnown RBP23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 TACC3Q9Y6A5 838 aa23.41■■□□□ 1.34
SMPDL3A-202ENST00000487215 ZBED9Q6R2W3 1325 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 RAB11FIP3O75154 756 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 CLTBP09497 229 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 STAT3P40763 770 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 REPS2Q8NFH8 660 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 MAFAQ8NHW3 353 aaPredicted RBP23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 HAUS7Q99871 368 aa23.4■■□□□ 1.34
SMPDL3A-202ENST00000487215 A0A1W2PQ45 241 aaPredicted RBP23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 A0A1W2PQY0 241 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 ZNF865P0CJ78 1059 aaPredicted RBP23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 EPHB4P54760 987 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 UBE3CQ15386 1083 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 FAM83BQ5T0W9 1011 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 MYLIPQ8WY64 445 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 LENG1Q96BZ8 264 aaPredicted RBP23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 DDRGK1Q96HY6 314 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 GOPCQ9HD26 462 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 SLC4A4Q9Y6R1 1079 aa23.39■■□□□ 1.33
SMPDL3A-202ENST00000487215 EYSQ5T1H1 3165 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 ZNFX1Q9P2E3 1918 aaKnown RBP23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 KIAA0355O15063 1070 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 RAD21O60216 631 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 AKR1A1P14550 325 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 COPB2P35606 906 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 CTR9Q6PD62 1173 aa23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.38■■□□□ 1.33
SMPDL3A-202ENST00000487215 PQBP1O60828 265 aaKnown RBP23.37■■□□□ 1.33
SMPDL3A-202ENST00000487215 ADAMTS4O75173 837 aa23.37■■□□□ 1.33
SMPDL3A-202ENST00000487215 RNPC3Q96LT9 517 aaKnown RBP23.37■■□□□ 1.33
SMPDL3A-202ENST00000487215 ZBTB40Q9NUA8 1239 aa23.37■■□□□ 1.33
SMPDL3A-202ENST00000487215 PLXNA1Q9UIW2 1896 aa23.36■■□□□ 1.33
SMPDL3A-202ENST00000487215 MS4A1P11836 297 aa23.36■■□□□ 1.33
SMPDL3A-202ENST00000487215 RAG1P15918 1043 aa23.36■■□□□ 1.33
SMPDL3A-202ENST00000487215 PUS7LQ9H0K6 701 aaKnown RBP23.36■■□□□ 1.33
SMPDL3A-202ENST00000487215 CNPY2Q9Y2B0 182 aa23.36■■□□□ 1.33
SMPDL3A-202ENST00000487215 SMCHD1A6NHR9 2005 aa23.35■■□□□ 1.33
SMPDL3A-202ENST00000487215 NUP88Q99567 741 aaPredicted RBP23.35■■□□□ 1.33
SMPDL3A-202ENST00000487215 DDX19BQ9UMR2 479 aa23.35■■□□□ 1.33
SMPDL3A-202ENST00000487215 COG6Q9Y2V7 657 aa23.35■■□□□ 1.33
SMPDL3A-202ENST00000487215 FOSL2P15408 326 aa23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 SLF1Q9BQI6 1058 aa23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 TSEN34Q9BSV6 310 aaKnown RBP23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 TEX13BQ9BXU2 312 aa23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 TMEM39AQ9NV64 488 aa23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 ARPP21Q9UBL0 812 aaPredicted RBP23.34■■□□□ 1.33
SMPDL3A-202ENST00000487215 SYNRGQ9UMZ2 1314 aa23.33■■□□□ 1.33
SMPDL3A-202ENST00000487215 GREB1LQ9C091 1923 aaPredicted RBP23.33■■□□□ 1.33
SMPDL3A-202ENST00000487215 TMEM265A0A087WTH1 108 aa23.33■■□□□ 1.33
SMPDL3A-202ENST00000487215 ACLYP53396 1101 aa23.33■■□□□ 1.33
SMPDL3A-202ENST00000487215 FPGSQ05932 587 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms