RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	TOX2	Q96NM4	488 aa		6.65	□□□□□ -1.34
SNRNP40-205	ENST00000486941	PPP1R16B	Q96T49	567 aa		6.65	□□□□□ -1.34
SNRNP40-205	ENST00000486941	DCP1A	Q9NPI6	582 aa	Predicted RBP	6.65	□□□□□ -1.34
SNRNP40-205	ENST00000486941	PCDHA11	Q9Y5I1	949 aa		6.65	□□□□□ -1.34
SNRNP40-205	ENST00000486941	PRR36	Q9H6K5	1346 aa		6.65	□□□□□ -1.35
SNRNP40-205	ENST00000486941	NOTO	A8MTQ0	251 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	MED14OS	P0DP75	135 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ZSCAN22	P10073	491 aa	Predicted RBP	6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	LMNB1	P20700	586 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GART	P22102	1010 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	EGR3	Q06889	387 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	FAM13C	Q8NE31	585 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	FBXO27	Q8NI29	283 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	DUSP13	Q9UII6	198 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ZNF281	Q9Y2X9	895 aa		6.64	□□□□□ -1.35
SNRNP40-205	ENST00000486941	LMNB2	Q03252	620 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ATG14	Q6ZNE5	492 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	SND1	Q7KZF4	910 aa	Known RBP eCLIP	6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TMC4	Q7Z404	712 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	CCDC84	Q86UT8	332 aa	Predicted RBP	6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	SIAH1	Q8IUQ4	282 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	SLFN12	Q8IYM2	578 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GATAD2B	Q8WXI9	593 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	SHISA4	Q96DD7	197 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	EPB41L4B	Q9H329	900 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	REV1	Q9UBZ9	1251 aa		6.63	□□□□□ -1.35
SNRNP40-205	ENST00000486941	MYOCOS	A0A1B0GUC4	107 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GRIN3B	O60391	1043 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GALK1	P51570	392 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	PSMD2	Q13200	908 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	AMIGO3	Q86WK7	504 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	CCDC120	Q96HB5	630 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	G6PC3	Q9BUM1	346 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KRTAP4-11	Q9BYQ6	195 aa		6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	SMG5	Q9UPR3	1016 aa	Known RBP	6.62	□□□□□ -1.35
SNRNP40-205	ENST00000486941	HECW2	Q9P2P5	1572 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ARAP3	Q8WWN8	1544 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ATP10B	O94823	1461 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	PHLDB1	Q86UU1	1377 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	NFIB	O00712	420 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	RAC2	P15153	192 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TEK	Q02763	1124 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	FAM160A1	Q05DH4	1040 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KCNA10	Q16322	511 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	RNF141	Q8WVD5	230 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KREMEN1	Q96MU8	473 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	MCOLN1	Q9GZU1	580 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TRIT1	Q9H3H1	467 aa	Known RBP	6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GPATCH2	Q9NW75	528 aa		6.61	□□□□□ -1.35
SNRNP40-205	ENST00000486941	RBM47	A0AV96	593 aa	Known RBP	6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TMEM253	P0C7T8	217 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	RLBP1	P12271	317 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GLDC	P23378	1020 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TTLL10	Q6ZVT0	673 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	PDZD8	Q8NEN9	1154 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	TMEM74	Q96NL1	305 aa		6.6	□□□□□ -1.35
SNRNP40-205	ENST00000486941	ABCA9	Q8IUA7	1624 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	PSPN	O60542	156 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	HTR3B	O95264	441 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	LINC01599	Q8WXQ3	324 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KCNN1	Q92952	543 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KIF2C	Q99661	725 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	RSRP1	Q9BUV0	290 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	GCM1	Q9NP62	436 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	COPRS	Q9NQ92	184 aa		6.59	□□□□□ -1.35
SNRNP40-205	ENST00000486941	KIF21B	O75037	1637 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	SAMD9	Q5K651	1589 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	YARS	P54577	528 aa	Known RBP	6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	NR0B2	Q15466	257 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	USHBP1	Q8N6Y0	703 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	KLHL3	Q9UH77	587 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	RAPGEF6	Q8TEU7	1601 aa		6.58	□□□□□ -1.36
SNRNP40-205	ENST00000486941	MINDY4B	A8MYZ0	360 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	UBOX5	O94941	541 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	LTK	P29376	864 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	GBP2	P32456	591 aa	Predicted RBP	6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	LINC00310	P59036	64 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	LILRA6	Q6PI73	481 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	GOLM1	Q8NBJ4	401 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	C20orf173	Q96LM9	149 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	CCDC74B	Q96LY2	380 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	SGPP1	Q9BX95	441 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	KCNH3	Q9ULD8	1083 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	YBX2	Q9Y2T7	364 aa	Known RBP	6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	NEO1	Q92859	1461 aa		6.57	□□□□□ -1.36
SNRNP40-205	ENST00000486941	SLC22A31	A6NKX4	558 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	RAPGEF3	O95398	923 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	FBXL19	Q6PCT2	694 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	REC114	Q7Z4M0	266 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	CRELD1	Q96HD1	420 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	INTS4	Q96HW7	963 aa	Known RBP	6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	SLC26A8	Q96RN1	970 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	ZNF552	Q9H707	407 aa	Predicted RBP	6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	EEA1	Q15075	1411 aa		6.56	□□□□□ -1.36
SNRNP40-205	ENST00000486941	ADAMTSL3	P82987	1691 aa		6.55	□□□□□ -1.36
SNRNP40-205	ENST00000486941	PLEKHD1	A6NEE1	506 aa		6.55	□□□□□ -1.36
SNRNP40-205	ENST00000486941	TLR3	O15455	904 aa	Known RBP	6.55	□□□□□ -1.36
SNRNP40-205	ENST00000486941	BPNT1	O95861	308 aa		6.55	□□□□□ -1.36
SNRNP40-205	ENST00000486941	DLG4	P78352	724 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms