RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 SCARF1Q14162 830 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 CCDC40Q4G0X9 1142 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 RRAGBQ5VZM2 374 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 MICALCLQ6ZW33 695 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 CREG2Q8IUH2 290 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 ZNF473Q8WTR7 871 aaKnown RBP11.93□□□□□ -0.5
CCDC171-208ENST00000486641 ZIM3Q96PE6 472 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 RUFY1Q96T51 708 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 DNAJC7Q99615 494 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 PAGR1Q9BTK6 254 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 PUS3Q9BZE2 481 aaKnown RBP11.93□□□□□ -0.5
CCDC171-208ENST00000486641 VEZTQ9HBM0 779 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 AATFQ9NY61 560 aaKnown RBP eCLIP11.93□□□□□ -0.5
CCDC171-208ENST00000486641 KCNG1Q9UIX4 513 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 ODF2LQ9ULJ1 636 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 LUC7L2Q9Y383 392 aaKnown RBP11.93□□□□□ -0.5
CCDC171-208ENST00000486641 SPEF2Q9C093 1822 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 STK36Q9NRP7 1315 aa11.93□□□□□ -0.5
CCDC171-208ENST00000486641 SIPA1L3O60292 1781 aaPredicted RBP11.92□□□□□ -0.5
CCDC171-208ENST00000486641 EYA2O00167 538 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 KRT14P02533 472 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 ADORA1P30542 326 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 ZAP70P43403 619 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 KRT83P78385 493 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 SF3B2Q13435 895 aaKnown RBP11.92□□□□□ -0.5
CCDC171-208ENST00000486641 FKBP15Q5T1M5 1219 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 IQCEQ6IPM2 695 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 ZNF662Q6ZS27 426 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 CCDC13Q8IYE1 715 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 CCDC82Q8N4S0 544 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 EHBP1Q8NDI1 1231 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 BLZF1Q9H2G9 400 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 CENPHQ9H3R5 247 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 CEP131Q9UPN4 1083 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 ANO9A1A5B4 782 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 MATR3P43243 847 aaKnown RBP eCLIP11.92□□□□□ -0.5
CCDC171-208ENST00000486641 EPHB4P54760 987 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 TMEM67Q5HYA8 995 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 IQCA1Q86XH1 822 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 WASF1Q92558 559 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 SYMPKQ92797 1274 aaKnown RBP11.92□□□□□ -0.5
CCDC171-208ENST00000486641 TMEM87BQ96K49 555 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 SLC40A1Q9NP59 571 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 VPS54Q9P1Q0 977 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 RWDD2AQ9UIY3 292 aa11.92□□□□□ -0.5
CCDC171-208ENST00000486641 USP54Q70EL1 1684 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 BCL9LQ86UU0 1499 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 MACROD2A1Z1Q3 448 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 IFNAR1P17181 557 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 SEC24CP53992 1094 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 APBA1Q02410 837 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 SPAG1Q07617 926 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 IFT88Q13099 833 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 PPP2R5AQ15172 486 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 PI16Q6UXB8 463 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 KDM7AQ6ZMT4 941 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 SGMS1Q86VZ5 419 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 CMTR1Q8N1G2 835 aaKnown RBP11.91□□□□□ -0.5
CCDC171-208ENST00000486641 MB21D1Q8N884 522 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 FAXDC2Q96IV6 333 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 SLC12A7Q9Y666 1083 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 FAM205CA6NFA0 338 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 H7C1W4 665 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 GCFC2P16383 781 aaKnown RBP11.91□□□□□ -0.5
CCDC171-208ENST00000486641 HDLBPQ00341 1268 aaKnown RBP11.91□□□□□ -0.5
CCDC171-208ENST00000486641 TSR1Q2NL82 804 aaKnown RBP11.91□□□□□ -0.5
CCDC171-208ENST00000486641 CEP85LQ5SZL2 805 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 EMBQ6PCB8 327 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 SPATA4Q8NEY3 305 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 NELFBQ8WX92 580 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 CCT8L2Q96SF2 557 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 DDX20Q9UHI6 824 aaKnown RBP11.91□□□□□ -0.5
CCDC171-208ENST00000486641 CAPN11Q9UMQ6 739 aa11.91□□□□□ -0.5
CCDC171-208ENST00000486641 ECM2O94769 699 aaPredicted RBP11.9□□□□□ -0.5
CCDC171-208ENST00000486641 PAX7P23759 505 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 PAK1Q13153 545 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 PTGISQ16647 500 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 NLRP14Q86W24 1093 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 IRF2BP1Q8IU81 584 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 SMCR8Q8TEV9 937 aaPredicted RBP11.9□□□□□ -0.5
CCDC171-208ENST00000486641 CAVIN3Q969G5 261 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 ZNF496Q96IT1 587 aaPredicted RBP11.9□□□□□ -0.5
CCDC171-208ENST00000486641 PURBQ96QR8 312 aaKnown RBP11.9□□□□□ -0.5
CCDC171-208ENST00000486641 SNX12Q9UMY4 172 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 TBC1D2BQ9UPU7 963 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 MAPK8IP1Q9UQF2 711 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 TMEM94Q12767 1356 aa11.9□□□□□ -0.5
CCDC171-208ENST00000486641 ZNF233A6NK53 670 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 PPP1R37O75864 691 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 PDHBP11177 359 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 CYP27A1Q02318 531 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 PLCB4Q15147 1175 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 C6orf89Q6UWU4 347 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 FAM228AQ86W67 206 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 CEP57Q86XR8 500 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 MYCBPAPQ8TBZ2 947 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 RUBCNQ92622 972 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 NHEJ1Q9H9Q4 299 aaPredicted RBP11.89□□□□□ -0.51
CCDC171-208ENST00000486641 AGPAT5Q9NUQ2 364 aa11.89□□□□□ -0.51
CCDC171-208ENST00000486641 SMARCAL1Q9NZC9 954 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms