RNA–Protein interactions for RNA: ENST00000483656.5

HDAC6-226, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-226ENST00000483656 PPP2R3BQ9Y5P8 575 aa11.69□□□□□ -0.54
HDAC6-226ENST00000483656 BAZ2BQ9UIF8 2168 aaKnown RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 PRPF40AO75400 957 aaKnown RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 NDUFB10O96000 172 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 MMP1P03956 469 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 SCG2P13521 617 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 INPP5BP32019 993 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 EPHX2P34913 555 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 USP50Q70EL3 339 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 CCDC84Q86UT8 332 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 USP48Q86UV5 1035 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 TMEM87AQ8NBN3 555 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 DCAF4Q8WV16 495 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 PHF20Q9BVI0 1012 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 ZNF341Q9BYN7 854 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 GLIS2Q9BZE0 524 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 VPS54Q9P1Q0 977 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 PCDH10Q9P2E7 1040 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 TFIP11Q9UBB9 837 aaKnown RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 SYNPO2Q9UMS6 1093 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 FZD1Q9UP38 647 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 TMX2Q9Y320 296 aa11.68□□□□□ -0.54
HDAC6-226ENST00000483656 POLR2AP24928 1970 aaKnown RBP11.68□□□□□ -0.54
HDAC6-226ENST00000483656 MYH6P13533 1939 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 ADM5C9JUS6 153 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 ADAMTS3O15072 1205 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 CTNND1O60716 968 aaKnown RBP11.67□□□□□ -0.54
HDAC6-226ENST00000483656 ASNSP08243 561 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 U2AF2P26368 475 aaKnown RBP eCLIP11.67□□□□□ -0.54
HDAC6-226ENST00000483656 TRIM29Q14134 588 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 DCAF15Q66K64 600 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 TYW1BQ6NUM6 668 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 KCTD1Q719H9 257 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 OXER1Q8TDS5 423 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 GMCL1Q96IK5 515 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 PIGSQ96S52 555 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 NUP88Q99567 741 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-226ENST00000483656 TAF1DQ9H5J8 278 aaPredicted RBP11.67□□□□□ -0.54
HDAC6-226ENST00000483656 VAT1LQ9HCJ6 419 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 GINM1Q9NU53 330 aa11.67□□□□□ -0.54
HDAC6-226ENST00000483656 RBM27Q9P2N5 1060 aaKnown RBP11.67□□□□□ -0.54
HDAC6-226ENST00000483656 TCHHQ07283 1943 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 BTBD18B2RXH4 712 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 GOLGA6L22H0YM25 854 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 STXBP3O00186 592 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 GADD45BO75293 160 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-226ENST00000483656 USP2O75604 605 aaPredicted RBP11.66□□□□□ -0.54
HDAC6-226ENST00000483656 SLC16A2P36021 539 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 CCDC96Q2M329 555 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 GPATCH4Q5T3I0 446 aaKnown RBP11.66□□□□□ -0.54
HDAC6-226ENST00000483656 WWC2Q6AWC2 1192 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 BRAPQ7Z569 592 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 DIS3L2Q8IYB7 885 aaKnown RBP11.66□□□□□ -0.54
HDAC6-226ENST00000483656 ADGRF4Q8IZF3 695 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 GPKOWQ92917 476 aaPredicted RBP eCLIP11.66□□□□□ -0.542e-6■■□□□ 12.7
HDAC6-226ENST00000483656 TNFRSF25Q93038 417 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 DCPSQ96C86 337 aaKnown RBP11.66□□□□□ -0.54
HDAC6-226ENST00000483656 MTMR8Q96EF0 704 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 USP28Q96RU2 1077 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 ANP32EQ9BTT0 268 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 JMJD4Q9H9V9 463 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 ARHGEF10LQ9HCE6 1279 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 WDR90Q96KV7 1748 aa11.66□□□□□ -0.54
HDAC6-226ENST00000483656 ATAD5Q96QE3 1844 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 USP17L10C9JJH3 530 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 FIBPO43427 364 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 TRAK2O60296 914 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 PPP1R11O60927 126 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 BMP3P12645 472 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 NCLP19338 710 aaKnown RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 SLC1A4P43007 532 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 KRT85P78386 507 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 NR5A1Q13285 461 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 SUPT20HL1Q3ZLR7 823 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 MYSM1Q5VVJ2 828 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 ZC3H15Q8WU90 426 aaKnown RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 ZKSCAN4Q969J2 545 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 KLRG1Q96E93 195 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 HOOK2Q96ED9 719 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 RRP36Q96EU6 259 aaKnown RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 FTOQ9C0B1 505 aaKnown RBP eCLIP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 FOXP1Q9H334 677 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-226ENST00000483656 VCPKMTQ9H867 229 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 SH3GLB2Q9NR46 395 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 BARHL2Q9NY43 387 aa11.65□□□□□ -0.54
HDAC6-226ENST00000483656 SCN4AP35499 1836 aa11.65□□□□□ -0.55
HDAC6-226ENST00000483656 MYH15Q9Y2K3 1946 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 XBP1P17861 261 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 PTMSP20962 102 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 SAFBQ15424 915 aaKnown RBP eCLIP11.64□□□□□ -0.55
HDAC6-226ENST00000483656 NOM1Q5C9Z4 860 aaKnown RBP11.64□□□□□ -0.55
HDAC6-226ENST00000483656 EARS2Q5JPH6 523 aaKnown RBP11.64□□□□□ -0.55
HDAC6-226ENST00000483656 ATL3Q6DD88 541 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 BTNL9Q6UXG8 535 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 KRT26Q7Z3Y9 468 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 HOMER1Q86YM7 354 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 NOSTRINQ8IVI9 506 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 SULF1Q8IWU6 871 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 SCYL3Q8IZE3 742 aa11.64□□□□□ -0.55
HDAC6-226ENST00000483656 SPICE1Q8N0Z3 855 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms