RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	KCNJ14	Q9UNX9	436 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	MYH4	Q9Y623	1939 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	SMARCA1	P28370	1054 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	SLC1A4	P43007	532 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	PRKG1	Q13976	671 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	PFKFB3	Q16875	520 aa	Predicted RBP	12.97	□□□□□ -0.33
APTX-223	ENST00000479656	KRT26	Q7Z3Y9	468 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	USP48	Q86UV5	1035 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	RGS22	Q8NE09	1264 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	GMCL1P1	Q8NEA9	526 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	ZC3H15	Q8WU90	426 aa	Known RBP	12.97	□□□□□ -0.33
APTX-223	ENST00000479656	SHISA4	Q96DD7	197 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	SPZ1	Q9BXG8	430 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	VPS54	Q9P1Q0	977 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	ZNF112	Q9UJU3	913 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	ISY1	Q9ULR0	285 aa	Known RBP	12.97	□□□□□ -0.33
APTX-223	ENST00000479656	TMX2	Q9Y320	296 aa		12.97	□□□□□ -0.33
APTX-223	ENST00000479656	NDUFB10	O96000	172 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	SCG2	P13521	617 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	SLC16A2	P36021	539 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	DCAF4	Q8WV16	495 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.96	□□□□□ -0.33
APTX-223	ENST00000479656	WRNIP1	Q96S55	665 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	NUP88	Q99567	741 aa	Predicted RBP	12.96	□□□□□ -0.33
APTX-223	ENST00000479656	GLIS2	Q9BZE0	524 aa	Predicted RBP	12.96	□□□□□ -0.33
APTX-223	ENST00000479656	RIOX1	Q9H6W3	641 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	GDPD2	Q9HCC8	539 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	CNPY2	Q9Y2B0	182 aa		12.96	□□□□□ -0.33
APTX-223	ENST00000479656	KIF28P	B7ZC32	967 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	USP2	O75604	605 aa	Predicted RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	MMP1	P03956	469 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	XBP1	P17861	261 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	NCL	P19338	710 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	KIF23	Q02241	960 aa	Predicted RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	ZYX	Q15942	572 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	KIAA1755	Q5JYT7	1200 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	GPATCH4	Q5T3I0	446 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	HOMER1	Q86YM7	354 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	SPICE1	Q8N0Z3	855 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	KLRG1	Q96E93	195 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	PIGS	Q96S52	555 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	RBM27	Q9P2N5	1060 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	TFIP11	Q9UBB9	837 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	GOLGA6L22	H0YM25	854 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	PRPF40A	O75400	957 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	PNMA8A	Q86V59	439 aa	Predicted RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	ADGRF4	Q8IZF3	695 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.95	□□□□□ -0.34	9e-6	■■□□□ 14.5
APTX-223	ENST00000479656	RRP36	Q96EU6	259 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	GMCL1	Q96IK5	515 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	RRAGC	Q9HB90	399 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	GINM1	Q9NU53	330 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	BAZ2B	Q9UIF8	2168 aa	Known RBP	12.95	□□□□□ -0.34
APTX-223	ENST00000479656	SYNPO2	Q9UMS6	1093 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	CLEC11A	Q9Y240	323 aa		12.95	□□□□□ -0.34
APTX-223	ENST00000479656	SSC5D	A1L4H1	1573 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	DDX11L8	A8MPP1	907 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	BTBD18	B2RXH4	712 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	BMP3	P12645	472 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	GNL2	Q13823	731 aa	Known RBP	12.94	□□□□□ -0.34
APTX-223	ENST00000479656	SCYL3	Q8IZE3	742 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	PHF20	Q9BVI0	1012 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	JMJD4	Q9H9V9	463 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	GOPC	Q9HD26	462 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	MYH6	P13533	1939 aa		12.94	□□□□□ -0.34
APTX-223	ENST00000479656	DCAF8L1	A6NGE4	600 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	POTEI	P0CG38	1075 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	POTEJ	P0CG39	1038 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	SAFB	Q15424	915 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
APTX-223	ENST00000479656	WWC2	Q6AWC2	1192 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	DIS3L2	Q8IYB7	885 aa	Known RBP	12.93	□□□□□ -0.34
APTX-223	ENST00000479656	SH2D4A	Q9H788	454 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	VCPKMT	Q9H867	229 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	LMBRD1	Q9NUN5	540 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	SCN4A	P35499	1836 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	USP17L10	C9JJH3	530 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	TMEM232	C9JQI7	657 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	U2AF2	P26368	475 aa	Known RBP eCLIP	12.93	□□□□□ -0.34	9e-15	■■■■■ 42.9
APTX-223	ENST00000479656	NLRP5	P59047	1200 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	KRT85	P78386	507 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	HEATR3	Q7Z4Q2	680 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	OXER1	Q8TDS5	423 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	CDCA5	Q96FF9	252 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	FEZ1	Q99689	392 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	PICK1	Q9NRD5	415 aa		12.93	□□□□□ -0.34
APTX-223	ENST00000479656	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.93	□□□□□ -0.34
APTX-223	ENST00000479656	SEC63	Q9UGP8	760 aa	Known RBP	12.93	□□□□□ -0.34
APTX-223	ENST00000479656	WDR90	Q96KV7	1748 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	FIBP	O43427	364 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	PPP1R12B	O60237	982 aa	Predicted RBP	12.92	□□□□□ -0.34
APTX-223	ENST00000479656	PTPRA	P18433	802 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	CEBPZ	Q03701	1054 aa	Known RBP	12.92	□□□□□ -0.34
APTX-223	ENST00000479656	IK	Q13123	557 aa	Predicted RBP	12.92	□□□□□ -0.34
APTX-223	ENST00000479656	NR5A1	Q13285	461 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	FAM83B	Q5T0W9	1011 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	TYW1B	Q6NUM6	668 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	BRAP	Q7Z569	592 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	12.92	□□□□□ -0.34
APTX-223	ENST00000479656	SH3GLB2	Q9NR46	395 aa		12.92	□□□□□ -0.34
APTX-223	ENST00000479656	BARHL2	Q9NY43	387 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms