RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GP6Q9HCN6 339 aa7.19□□□□□ -1.26
UPF3B-203ENST00000478840 SSU72Q9NP77 194 aaKnown RBP7.19□□□□□ -1.26
UPF3B-203ENST00000478840 PDE8AO60658 829 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 SOX5P35711 763 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 MAP7Q14244 749 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 LETMD1Q6P1Q0 360 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 NSMFQ6X4W1 530 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 CRACR2BQ8N4Y2 399 aaPredicted RBP7.18□□□□□ -1.26
UPF3B-203ENST00000478840 PRPF38AQ8NAV1 312 aaKnown RBP7.18□□□□□ -1.26
UPF3B-203ENST00000478840 NEDD1Q8NHV4 660 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 XAGE3Q8WTP9 111 aa7.18□□□□□ -1.26
UPF3B-203ENST00000478840 ZNF512BQ96KM6 892 aaPredicted RBP7.18□□□□□ -1.26
UPF3B-203ENST00000478840 MAGEC2Q9UBF1 373 aaPredicted RBP7.18□□□□□ -1.26
UPF3B-203ENST00000478840 TBX1O43435 398 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 SLITRK5O94991 958 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 PARNO95453 639 aaKnown RBP7.17□□□□□ -1.26
UPF3B-203ENST00000478840 C6orf222P0C671 652 aaPredicted RBP7.17□□□□□ -1.26
UPF3B-203ENST00000478840 ITGA4P13612 1032 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 GRIA2P42262 883 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 PREPP48147 710 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 SNRPNP63162 240 aaKnown RBP7.17□□□□□ -1.26
UPF3B-203ENST00000478840 NBPF9Q3BBW0 867 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 ADAT2Q7Z6V5 191 aaKnown RBP7.17□□□□□ -1.26
UPF3B-203ENST00000478840 JAMLQ86YT9 394 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 EZH1Q92800 747 aaPredicted RBP7.17□□□□□ -1.26
UPF3B-203ENST00000478840 FHOD1Q9Y613 1164 aa7.17□□□□□ -1.26
UPF3B-203ENST00000478840 NOP56O00567 594 aaKnown RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 PRODHO43272 600 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 POU3F2P20265 443 aaPredicted RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 PMLP29590 882 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 CNGA1P29973 690 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 ETV3P41162 512 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 CCDC181Q5TID7 509 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 LRRTM3Q86VH5 581 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 AGGF1Q8N302 714 aaeCLIP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 GSTCDQ8NEC7 633 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 SYTL5Q8TDW5 730 aaPredicted RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 PPP1R14AQ96A00 147 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 CCDC140Q96MF4 163 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 FAM126AQ9BYI3 521 aaPredicted RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 CEP41Q9BYV8 373 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 SEMA6CQ9H3T2 930 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 AKTIPQ9H8T0 292 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 TRIM39Q9HCM9 518 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 HOMER2Q9NSB8 354 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 CGGBP1Q9UFW8 167 aaPredicted RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 MKL2Q9ULH7 1088 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 AKT3Q9Y243 479 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 DIS3Q9Y2L1 958 aaKnown RBP7.16□□□□□ -1.26
UPF3B-203ENST00000478840 SUGT1Q9Y2Z0 365 aa7.16□□□□□ -1.26
UPF3B-203ENST00000478840 FAM83GA6ND36 823 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 S100BP04271 92 aaPredicted RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 SDSP20132 328 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 CDKN1CP49918 316 aaPredicted RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 ZNF445P59923 1031 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 GABREP78334 506 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 MAP4K2Q12851 820 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 GRB10Q13322 594 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 PRRT3Q5FWE3 981 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 SEZ6L2Q6UXD5 910 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 FERMT3Q86UX7 667 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 DDX42Q86XP3 938 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 AFAP1L2Q8N4X5 818 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 RIN3Q8TB24 985 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 DDX1Q92499 740 aaKnown RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 LENG1Q96BZ8 264 aaPredicted RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 FAM46AQ96IP4 442 aaKnown RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 MIPEPQ99797 713 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 IER2Q9BTL4 223 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 TARS2Q9BW92 718 aaKnown RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 LGR4Q9BXB1 951 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 NOP53Q9NZM5 478 aaKnown RBP7.15□□□□□ -1.26
UPF3B-203ENST00000478840 PCDHB12Q9Y5F1 795 aa7.15□□□□□ -1.26
UPF3B-203ENST00000478840 ALG1L2C9J202 215 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 FAM229AH3BQW9 127 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 DLX3O60479 287 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 EFCAB14O75071 495 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 NPTXRO95502 500 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 SCG5P05408 212 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 GFRA1P56159 465 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 EXOSC10Q01780 885 aaKnown RBP7.14□□□□□ -1.27
UPF3B-203ENST00000478840 CDPF1Q6NVV7 123 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.14□□□□□ -1.27
UPF3B-203ENST00000478840 CDH24Q86UP0 819 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 PPM1KQ8N3J5 372 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 COX4I2Q96KJ9 171 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 YIPF2Q9BWQ6 316 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 NKX2-4Q9H2Z4 354 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 PRDM10Q9NQV6 1147 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 SFMBT1Q9UHJ3 866 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 MCM8Q9UJA3 840 aa7.14□□□□□ -1.27
UPF3B-203ENST00000478840 DNAJC8O75937 253 aaPredicted RBP7.13□□□□□ -1.27
UPF3B-203ENST00000478840 HOXC12P31275 282 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 GSK3AP49840 483 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 USP11P51784 963 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 NFKB2Q00653 900 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 UVSSAQ2YD98 709 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 GTF2IRD2BQ6EKJ0 949 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 SHISA2Q6UWI4 295 aa7.13□□□□□ -1.27
UPF3B-203ENST00000478840 NOL8Q76FK4 1167 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms