RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 HOXC6P09630 235 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 HSPD1P10809 573 aaKnown RBP25.86■■□□□ 1.73
COL9A3-211ENST00000477612 KLRC3Q07444 240 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 GRB14Q14449 540 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 MAP3K21Q5TCX8 1036 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 UBE2Q1Q7Z7E8 422 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 ZNF589Q86UQ0 364 aaPredicted RBP25.86■■□□□ 1.73
COL9A3-211ENST00000477612 CLIP2Q9UDT6 1046 aa25.86■■□□□ 1.73
COL9A3-211ENST00000477612 STRNO43815 780 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 TTLL1O95922 423 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 TSPY3P0CV98 308 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 TSPY8P0CW00 308 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 IRX6P78412 446 aaPredicted RBP25.85■■□□□ 1.73
COL9A3-211ENST00000477612 TFAP4Q01664 338 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 PRPF38BQ5VTL8 546 aaKnown RBP25.85■■□□□ 1.73
COL9A3-211ENST00000477612 APBA2Q99767 749 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 CRISPLD2Q9H0B8 497 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 PPP1R9AQ9ULJ8 1098 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 CCDC171Q6TFL3 1326 aa25.85■■□□□ 1.73
COL9A3-211ENST00000477612 CTDSPL2Q05D32 466 aa25.84■■□□□ 1.73
COL9A3-211ENST00000477612 TRIM32Q13049 653 aa25.84■■□□□ 1.73
COL9A3-211ENST00000477612 FAM83BQ5T0W9 1011 aa25.84■■□□□ 1.73
COL9A3-211ENST00000477612 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.84■■□□□ 1.73
COL9A3-211ENST00000477612 CWC22Q9HCG8 908 aaKnown RBP25.84■■□□□ 1.73
COL9A3-211ENST00000477612 FBXO28Q9NVF7 368 aa25.84■■□□□ 1.73
COL9A3-211ENST00000477612 TACC3Q9Y6A5 838 aa25.84■■□□□ 1.73
COL9A3-211ENST00000477612 ORC4O43929 436 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 NDUFB10O96000 172 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 PDE4AP27815 886 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 FAM47AQ5JRC9 791 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 GMCL1P1Q8NEA9 526 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 DEFB118Q96PH6 123 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 MROH8Q9H579 483 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 HMX1Q9NP08 348 aaPredicted RBP25.83■■□□□ 1.73
COL9A3-211ENST00000477612 IVNS1ABPQ9Y6Y0 642 aa25.83■■□□□ 1.73
COL9A3-211ENST00000477612 IGHA2P01877 340 aa25.82■■□□□ 1.72
COL9A3-211ENST00000477612 ZKSCAN1P17029 563 aaPredicted RBP25.82■■□□□ 1.72
COL9A3-211ENST00000477612 ERCC3P19447 782 aa25.82■■□□□ 1.72
COL9A3-211ENST00000477612 MFAP1P55081 439 aaKnown RBP25.82■■□□□ 1.72
COL9A3-211ENST00000477612 TMEM132BQ14DG7 1078 aa25.82■■□□□ 1.72
COL9A3-211ENST00000477612 PPP4R3BQ5MIZ7 849 aa25.82■■□□□ 1.72
COL9A3-211ENST00000477612 REPS2Q8NFH8 660 aa25.82■■□□□ 1.72
COL9A3-211ENST00000477612 HIP1O00291 1037 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 VWA5AO00534 786 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 SLC25A27O95847 323 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 NOVP48745 357 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 CCL14Q16627 93 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 WDR78Q5VTH9 848 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 ABRAQ8N0Z2 381 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 INCENPQ9NQS7 918 aa25.81■■□□□ 1.72
COL9A3-211ENST00000477612 LAMA4Q16363 1823 aa25.8■■□□□ 1.72
COL9A3-211ENST00000477612 IL17RBQ9NRM6 502 aa25.8■■□□□ 1.72
COL9A3-211ENST00000477612 ZNF214Q9UL59 606 aaPredicted RBP25.8■■□□□ 1.72
COL9A3-211ENST00000477612 TSPY2A6NKD2 308 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 RAD21O60216 631 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 PRKAR2AP13861 404 aaKnown RBP25.79■■□□□ 1.72
COL9A3-211ENST00000477612 CACNB2Q08289 660 aaPredicted RBP25.79■■□□□ 1.72
COL9A3-211ENST00000477612 RIOX2Q8IUF8 465 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 PRPF38AQ8NAV1 312 aaKnown RBP25.79■■□□□ 1.72
COL9A3-211ENST00000477612 NPLOC4Q8TAT6 608 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 NUP88Q99567 741 aaPredicted RBP25.79■■□□□ 1.72
COL9A3-211ENST00000477612 SLF1Q9BQI6 1058 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 PLXNA1Q9UIW2 1896 aa25.79■■□□□ 1.72
COL9A3-211ENST00000477612 PCP11498 1178 aaKnown RBP25.78■■□□□ 1.72
COL9A3-211ENST00000477612 PLS1Q14651 629 aa25.78■■□□□ 1.72
COL9A3-211ENST00000477612 FLRT1Q9NZU1 646 aa25.78■■□□□ 1.72
COL9A3-211ENST00000477612 FRMPD3Q5JV73 1810 aa25.78■■□□□ 1.72
COL9A3-211ENST00000477612 TFRCP02786 760 aaKnown RBP25.77■■□□□ 1.72
COL9A3-211ENST00000477612 ADORA2AP29274 412 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 STAT3P40763 770 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 TTC22Q5TAA0 569 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 CWC27Q6UX04 472 aaKnown RBP25.77■■□□□ 1.72
COL9A3-211ENST00000477612 NCAPG2Q86XI2 1143 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 ANKLE1Q8NAG6 615 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 DIAPH3Q9NSV4 1193 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 FEM1BQ9UK73 627 aa25.77■■□□□ 1.72
COL9A3-211ENST00000477612 ATP2A1O14983 1001 aa25.76■■□□□ 1.71
COL9A3-211ENST00000477612 COPB2P35606 906 aa25.76■■□□□ 1.71
COL9A3-211ENST00000477612 SLFN13Q68D06 897 aa25.76■■□□□ 1.71
COL9A3-211ENST00000477612 LRRC47Q8N1G4 583 aaKnown RBP25.76■■□□□ 1.71
COL9A3-211ENST00000477612 TCP11L1Q9NUJ3 509 aa25.76■■□□□ 1.71
COL9A3-211ENST00000477612 OGDHLQ9ULD0 1010 aa25.76■■□□□ 1.71
COL9A3-211ENST00000477612 RANBP6O60518 1105 aaKnown RBP25.75■■□□□ 1.71
COL9A3-211ENST00000477612 FARP2O94887 1054 aaPredicted RBP25.75■■□□□ 1.71
COL9A3-211ENST00000477612 GSPT1P15170 499 aaKnown RBP25.75■■□□□ 1.71
COL9A3-211ENST00000477612 MFSD14CQ5VZR4 134 aa25.75■■□□□ 1.71
COL9A3-211ENST00000477612 OLFML2BQ68BL8 750 aa25.75■■□□□ 1.71
COL9A3-211ENST00000477612 SAMD1Q6SPF0 538 aaPredicted RBP25.75■■□□□ 1.71
COL9A3-211ENST00000477612 DPP9Q86TI2 863 aa25.75■■□□□ 1.71
COL9A3-211ENST00000477612 GMCL1Q96IK5 515 aa25.75■■□□□ 1.71
COL9A3-211ENST00000477612 PLA2G6O60733 806 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 COBLO75128 1261 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 FCER1AP12319 257 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 BMP3P12645 472 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 AKNAD1Q5T1N1 836 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 STAG1Q8WVM7 1258 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 DSCC1Q9BVC3 393 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 NBPF3Q9H094 633 aa25.74■■□□□ 1.71
COL9A3-211ENST00000477612 NMT2O60551 498 aa25.73■■□□□ 1.71
COL9A3-211ENST00000477612 FDX1P10109 184 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms