RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 GRAPLQ8TC17 118 aaPredicted RBP9.47□□□□□ -0.89
PTPRD-209ENST00000477552 SYMPKQ92797 1274 aaKnown RBP9.47□□□□□ -0.89
PTPRD-209ENST00000477552 DHX58Q96C10 678 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 ZKSCAN3Q9BRR0 538 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 MKNK2Q9HBH9 465 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 VPS54Q9P1Q0 977 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 ADD3Q9UEY8 706 aaKnown RBP9.47□□□□□ -0.89
PTPRD-209ENST00000477552 ZNF215Q9UL58 517 aaPredicted RBP9.47□□□□□ -0.89
PTPRD-209ENST00000477552 MYO3BQ8WXR4 1341 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 BTAF1O14981 1849 aa9.47□□□□□ -0.89
PTPRD-209ENST00000477552 LTBP4Q8N2S1 1624 aa9.46□□□□□ -0.89
PTPRD-209ENST00000477552 A0A1W2PQC6 194 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 ESYT2A0FGR8 921 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 PSMA7O14818 248 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 NPHP1O15259 732 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 H2AFXP16104 143 aaPredicted RBP9.46□□□□□ -0.9
PTPRD-209ENST00000477552 DMTNQ08495 405 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 GPS2Q13227 327 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 TEX35Q5T0J7 233 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 CYP26C1Q6V0L0 522 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 ZNF662Q6ZS27 426 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 TC2NQ8N9U0 490 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 PNMA1Q8ND90 353 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 RABGGTAQ92696 567 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 ERCC4Q92889 916 aaPredicted RBP9.46□□□□□ -0.9
PTPRD-209ENST00000477552 FBXW7Q969H0 707 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 ACSBG1Q96GR2 724 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 DHTKD1Q96HY7 919 aaPredicted RBP9.46□□□□□ -0.9
PTPRD-209ENST00000477552 GBP3Q9H0R5 595 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 THAP9Q9H5L6 903 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 C6orf50Q9HD87 102 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 MCM9Q9NXL9 1143 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 MAGEC2Q9UBF1 373 aaPredicted RBP9.46□□□□□ -0.9
PTPRD-209ENST00000477552 ABCB11O95342 1321 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 MYH1P12882 1939 aa9.46□□□□□ -0.9
PTPRD-209ENST00000477552 A0A0G2JS52 829 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 USP27XA6NNY8 438 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 BBOX1O75936 387 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TSPY3P0CV98 308 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TSPY8P0CW00 308 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 BMP6P22004 513 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 PBX1P40424 430 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 UBA7P41226 1012 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 STAT6P42226 847 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 PIP4K2BP78356 416 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 MAP3K9P80192 1104 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 ARID5BQ14865 1188 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 SEPT2Q15019 361 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 E2F4Q16254 413 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 SOGA3Q5TF21 947 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 PPP1R18Q6NYC8 613 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TRIM65Q6PJ69 517 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TMCO3Q6UWJ1 677 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 ADGRA1Q86SQ6 560 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TMEM139Q8IV31 216 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 REXO1L1PQ8IX06 675 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 SRBD1Q8N5C6 995 aaKnown RBP9.45□□□□□ -0.9
PTPRD-209ENST00000477552 PDILTQ8N807 584 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 IGSF22Q8N9C0 903 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 LINC00116Q8NCU8 138 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 CERKQ8TCT0 537 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 RPGRIP1Q96KN7 1286 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 BARHL2Q9NY43 387 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 SEC63Q9UGP8 760 aaKnown RBP9.45□□□□□ -0.9
PTPRD-209ENST00000477552 TACC3Q9Y6A5 838 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 STK24Q9Y6E0 443 aa9.45□□□□□ -0.9
PTPRD-209ENST00000477552 COL1A1P02452 1464 aaPredicted RBP9.45□□□□□ -0.9
PTPRD-209ENST00000477552 VWA3AA6NCI4 1184 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 PPP1R3GB7ZBB8 358 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 N4BP3O15049 544 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 ERLIN1O75477 346 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 URI1O94763 535 aaPredicted RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 IPO7O95373 1038 aaKnown RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 PLEKHA8P1O95397 391 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 RFC4P35249 363 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 DNM2P50570 870 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 GNG11P61952 73 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 DYNLL1P63167 89 aaKnown RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 KRT83P78385 493 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 TFAP4Q01664 338 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 BRD3Q15059 726 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 NPY5RQ15761 445 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 TRAPPC3LQ5T215 181 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 RRAGBQ5VZM2 374 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 TBC1D9BQ66K14 1250 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 RASGRP2Q7LDG7 609 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 CCDC82Q8N4S0 544 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 OXER1Q8TDS5 423 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 GOLGA1Q92805 767 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 CELF1Q92879 486 aaKnown RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 RRP36Q96EU6 259 aaKnown RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 ZMYND12Q9H0C1 365 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 ACBD3Q9H3P7 528 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 INCENPQ9NQS7 918 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 DISC1Q9NRI5 854 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 ANKIB1Q9P2G1 1089 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 STK17AQ9UEE5 414 aa9.44□□□□□ -0.9
PTPRD-209ENST00000477552 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 V9GYY5 206 aaPredicted RBP9.44□□□□□ -0.9
PTPRD-209ENST00000477552 SPATA31A6Q5VVP1 1343 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms