RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GSX2Q9BZM3 304 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 GREM2Q9H772 168 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 BSDC1Q9NW68 430 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 DNAJB12Q9NXW2 375 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 KIAA1024Q9UPX6 916 aa8.62□□□□□ -1.03
CCDC88A-213ENST00000476903 A0A1B0GUL6 1792 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 E9PSI1 815 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 H7C1D1 291 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 PSMD14O00487 310 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 RPS12P25398 132 aaKnown RBP8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 IGHMBP2P38935 993 aaKnown RBP8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 CASP7P55210 303 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 TBC1D8BQ0IIM8 1120 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 BEND3Q5T5X7 828 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 FBXO11Q86XK2 927 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 DPF2Q92785 391 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 MEGF10Q96KG7 1140 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 GPR101Q96P66 508 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 MKRN1Q9UHC7 482 aaKnown RBP8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 CNTNAP1P78357 1384 aa8.61□□□□□ -1.03
CCDC88A-213ENST00000476903 F6X3S4 739 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 CCER2I3L3R5 266 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 CSF1RP07333 972 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 IREB2P48200 963 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 BTLAQ7Z6A9 289 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 IGFLR1Q9H665 355 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 EFCC1Q9HA90 598 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 CNOT7Q9UIV1 285 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 MINPP1Q9UNW1 487 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 MED23Q9ULK4 1368 aa8.6□□□□□ -1.03
CCDC88A-213ENST00000476903 ANKRD18BA2A2Z9 1011 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 GRM8O00222 908 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 ALDH1L1O75891 902 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 VIL1P09327 827 aaKnown RBP8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 SLC4A10Q6U841 1118 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 DEPDC4Q8N2C3 294 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 DTWD1Q8N5C7 304 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 TRPM4Q8TD43 1214 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 MPHOSPH8Q99549 860 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 KCNQ5Q9NR82 932 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 PGAP2Q9UHJ9 254 aa8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 ABT1Q9ULW3 272 aaKnown RBP8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 ZNF646O15015 1829 aaPredicted RBP8.59□□□□□ -1.03
CCDC88A-213ENST00000476903 ZNF609O15014 1411 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 SHTN1A0MZ66 631 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 TRAF5O00463 557 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 RGS9O75916 674 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 HSPA1AP0DMV8 641 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 HSPA1BP0DMV9 641 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 CCT4P50991 539 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 FOXO4P98177 505 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 PLAURQ03405 335 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 SLFN5Q08AF3 891 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 IFIT5Q13325 482 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 DEFB115Q30KQ5 88 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 PRR23CQ6ZRP0 262 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 SRCIN1Q9C0H9 1055 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 ANKRD2Q9GZV1 360 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 C9orf78Q9NZ63 289 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 LEMD3Q9Y2U8 911 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 CHMP3Q9Y3E7 222 aa8.58□□□□□ -1.04
CCDC88A-213ENST00000476903 PTPRCP08575 1304 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 USP17L3A6NCW0 530 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 USP17L4A6NCW7 530 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 RASSF10A6NK89 507 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 USP17L5A8MUK1 530 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 GRNP28799 593 aaKnown RBP8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 KCNJ4P48050 445 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 CLDN10P78369 228 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 CCDC57Q2TAC2 916 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 KIF4BQ2VIQ3 1234 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 CST9Q5W186 159 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 CDC37L1Q7L3B6 337 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 USP17L1Q7RTZ2 530 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 AGBL3Q8NEM8 1001 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 TPCN2Q8NHX9 752 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 GLIS2Q9BZE0 524 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 COA1Q9GZY4 146 aa8.57□□□□□ -1.04
CCDC88A-213ENST00000476903 ZNF804BA4D1E1 1349 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 THSD7BQ9C0I4 1608 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 M0R2N6 131 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 DKK1O94907 266 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 CELF2O95319 508 aaKnown RBP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 FMR1Q06787 632 aaKnown RBP eCLIP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 CHRNDQ07001 517 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 TBC1D10BQ4KMP7 808 aaPredicted RBP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 TAF7LQ5H9L4 462 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 CCDC102BQ68D86 513 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 LMBR1LQ6UX01 489 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 ERICH6Q7L0X2 663 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 DCPSQ96C86 337 aaKnown RBP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 LPIN3Q9BQK8 851 aa8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 DMGDHQ9UI17 866 aaKnown RBP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.56□□□□□ -1.04
CCDC88A-213ENST00000476903 WDR33Q9C0J8 1336 aaKnown RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 WTIPA6NIX2 430 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 DEAF1O75398 565 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 EGFRP00533 1210 aa8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 CT47B1P0C2W7 299 aaPredicted RBP8.55□□□□□ -1.04
CCDC88A-213ENST00000476903 ECE1P42892 770 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms