RNA–Protein interactions for RNA: ENST00000475375.1

VPS36-203, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 2

Gene VPS36, Length 754 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-203ENST00000475375 TMEM132BQ14DG7 1078 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 C1orf53Q5VUE5 145 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 RNF180Q86T96 592 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 SIAH1Q8IUQ4 282 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 AMOTL1Q8IY63 956 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 CLASRPQ8N2M8 674 aaKnown RBP24.69■■□□□ 1.54
VPS36-203ENST00000475375 RNPC3Q96LT9 517 aaKnown RBP24.69■■□□□ 1.54
VPS36-203ENST00000475375 PHF24Q9UPV7 400 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 TACC3Q9Y6A5 838 aa24.69■■□□□ 1.54
VPS36-203ENST00000475375 CDH23Q9H251 3354 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 PRKAB2O43741 272 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 PGK1P00558 417 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 CLTBP09497 229 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 IFIT2P09913 472 aaKnown RBP24.68■■□□□ 1.54
VPS36-203ENST00000475375 FOSL2P15408 326 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 KCTD2Q14681 263 aa24.68■■□□□ 1.54
VPS36-203ENST00000475375 TTYH1Q9H313 450 aaPredicted RBP24.68■■□□□ 1.54
VPS36-203ENST00000475375 PQBP1O60828 265 aaKnown RBP24.67■■□□□ 1.54
VPS36-203ENST00000475375 MBD4O95243 580 aa24.67■■□□□ 1.54
VPS36-203ENST00000475375 CCDC17Q96LX7 622 aa24.67■■□□□ 1.54
VPS36-203ENST00000475375 ATP8A2Q9NTI2 1148 aa24.67■■□□□ 1.54
VPS36-203ENST00000475375 NRBP1Q9UHY1 535 aa24.67■■□□□ 1.54
VPS36-203ENST00000475375 CYP2D7A0A087X1C5 515 aa24.66■■□□□ 1.54
VPS36-203ENST00000475375 RAG1P15918 1043 aa24.66■■□□□ 1.54
VPS36-203ENST00000475375 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.66■■□□□ 1.54
VPS36-203ENST00000475375 TINF2Q9BSI4 451 aa24.66■■□□□ 1.54
VPS36-203ENST00000475375 TAL1P17542 331 aaPredicted RBP24.65■■□□□ 1.54
VPS36-203ENST00000475375 ITGB8P26012 769 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 CDK8P49336 464 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 RIOX2Q8IUF8 465 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 KIF1BPQ96EK5 621 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 DDRGK1Q96HY6 314 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 FBXO28Q9NVF7 368 aa24.65■■□□□ 1.54
VPS36-203ENST00000475375 EEF2P13639 858 aaKnown RBP24.64■■□□□ 1.54
VPS36-203ENST00000475375 STAT3P40763 770 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 SLFNL1Q499Z3 407 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 PANK1Q8TE04 598 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 GOPCQ9HD26 462 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 TMEM39AQ9NV64 488 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 PAG1Q9NWQ8 432 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 CNPY2Q9Y2B0 182 aa24.64■■□□□ 1.54
VPS36-203ENST00000475375 MYH8P13535 1937 aa24.64■■□□□ 1.53
VPS36-203ENST00000475375 A0A1W2PQ45 241 aaPredicted RBP24.63■■□□□ 1.53
VPS36-203ENST00000475375 A0A1W2PQY0 241 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 SMIM22K7EJ46 135 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 VWA5AO00534 786 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 AKR1A1P14550 325 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 FPGSQ05932 587 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 ZNF792Q3KQV3 632 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 C12orf60Q5U649 245 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 LENG1Q96BZ8 264 aaPredicted RBP24.63■■□□□ 1.53
VPS36-203ENST00000475375 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.63■■□□□ 1.534e-6■■□□□ 13.6
VPS36-203ENST00000475375 KANSL2Q9H9L4 492 aa24.63■■□□□ 1.53
VPS36-203ENST00000475375 USP17L12C9JPN9 530 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 USP17L21D6R901 530 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 ADD2P35612 726 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 EPHB4P54760 987 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 FAM83BQ5T0W9 1011 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 C16orf86Q6ZW13 317 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 BOLA2Q9H3K6 86 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 PPP1R9AQ9ULJ8 1098 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 ADAMTS5Q9UNA0 930 aa24.62■■□□□ 1.53
VPS36-203ENST00000475375 DIS3Q9Y2L1 958 aaKnown RBP24.62■■□□□ 1.53
VPS36-203ENST00000475375 SMCHD1A6NHR9 2005 aa24.61■■□□□ 1.53
VPS36-203ENST00000475375 KIAA0355O15063 1070 aa24.61■■□□□ 1.53
VPS36-203ENST00000475375 COPB2P35606 906 aa24.61■■□□□ 1.53
VPS36-203ENST00000475375 HNRNPUQ00839 825 aaKnown RBP eCLIP24.61■■□□□ 1.53
VPS36-203ENST00000475375 ZNFX1Q9P2E3 1918 aaKnown RBP24.61■■□□□ 1.53
VPS36-203ENST00000475375 TMEM265A0A087WTH1 108 aa24.6■■□□□ 1.53
VPS36-203ENST00000475375 DCDC2CA8MYV0 355 aa24.6■■□□□ 1.53
VPS36-203ENST00000475375 HMMRO75330 724 aa24.6■■□□□ 1.53
VPS36-203ENST00000475375 ZNF865P0CJ78 1059 aaPredicted RBP24.6■■□□□ 1.53
VPS36-203ENST00000475375 STARD7Q9NQZ5 370 aa24.6■■□□□ 1.53
VPS36-203ENST00000475375 BAZ2AQ9UIF9 1905 aaKnown RBP24.59■■□□□ 1.53
VPS36-203ENST00000475375 COL11A1P12107 1806 aaPredicted RBP24.59■■□□□ 1.53
VPS36-203ENST00000475375 SPTBN5Q9NRC6 3674 aaKnown RBP24.59■■□□□ 1.53
VPS36-203ENST00000475375 NUP133Q8WUM0 1156 aa24.59■■□□□ 1.53
VPS36-203ENST00000475375 ZNF214Q9UL59 606 aaPredicted RBP24.59■■□□□ 1.53
VPS36-203ENST00000475375 SLC4A4Q9Y6R1 1079 aa24.59■■□□□ 1.53
VPS36-203ENST00000475375 ROBO3Q96MS0 1386 aa24.58■■□□□ 1.53
VPS36-203ENST00000475375 SLC4A3P48751 1232 aa24.58■■□□□ 1.53
VPS36-203ENST00000475375 ACLYP53396 1101 aa24.58■■□□□ 1.53
VPS36-203ENST00000475375 DDX11Q96FC9 970 aa24.58■■□□□ 1.53
VPS36-203ENST00000475375 TSEN34Q9BSV6 310 aaKnown RBP24.58■■□□□ 1.53
VPS36-203ENST00000475375 PARP14Q460N5 1801 aa24.58■■□□□ 1.53
VPS36-203ENST00000475375 ADAMTS4O75173 837 aa24.57■■□□□ 1.52
VPS36-203ENST00000475375 DNAJB2P25686 324 aa24.57■■□□□ 1.52
VPS36-203ENST00000475375 FAAP100Q0VG06 881 aa24.57■■□□□ 1.52
VPS36-203ENST00000475375 ZHX1Q9UKY1 873 aaPredicted RBP24.57■■□□□ 1.52
VPS36-203ENST00000475375 FAM184BQ9ULE4 1060 aa24.57■■□□□ 1.52
VPS36-203ENST00000475375 SYNRGQ9UMZ2 1314 aa24.57■■□□□ 1.52
VPS36-203ENST00000475375 PLXNA1Q9UIW2 1896 aa24.56■■□□□ 1.52
VPS36-203ENST00000475375 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.56■■□□□ 1.52
VPS36-203ENST00000475375 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.56■■□□□ 1.52
VPS36-203ENST00000475375 CHGBP05060 677 aa24.56■■□□□ 1.52
VPS36-203ENST00000475375 GRIN2CQ14957 1233 aa24.56■■□□□ 1.52
VPS36-203ENST00000475375 SNRNP48Q6IEG0 339 aaKnown RBP24.56■■□□□ 1.52
VPS36-203ENST00000475375 CTR9Q6PD62 1173 aa24.56■■□□□ 1.52
VPS36-203ENST00000475375 ANKRD33Q7Z3H0 272 aa24.56■■□□□ 1.52
VPS36-203ENST00000475375 RPAP2Q8IXW5 612 aaPredicted RBP24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms