RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 COBLO75128 1261 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 ADORA2AP29274 412 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 AAMPQ13685 434 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 LRRFIP1Q32MZ4 808 aaKnown RBP16.84■□□□□ 0.29
UPF3A-204ENST00000475218 TRPV1Q8NER1 839 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 DPF3Q92784 378 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 EVI5LQ96CN4 794 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 CEP95Q96GE4 821 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 FAM227BQ96M60 508 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 INCENPQ9NQS7 918 aa16.84■□□□□ 0.29
UPF3A-204ENST00000475218 COLQQ9Y215 455 aaPredicted RBP16.84■□□□□ 0.29
UPF3A-204ENST00000475218 NDUFB10O96000 172 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 CAPN2P17655 700 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 PPARAQ07869 468 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 ANKLE1Q8NAG6 615 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 GOPCQ9HD26 462 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 MTMR4Q9NYA4 1195 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 ZNF214Q9UL59 606 aaPredicted RBP16.83■□□□□ 0.28
UPF3A-204ENST00000475218 PPP1R9AQ9ULJ8 1098 aa16.83■□□□□ 0.28
UPF3A-204ENST00000475218 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.83■□□□□ 0.28
UPF3A-204ENST00000475218 ZNFX1Q9P2E3 1918 aaKnown RBP16.83■□□□□ 0.28
UPF3A-204ENST00000475218 A0A0D9SFI3 127 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 F5H6K3 240 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 VWA5AO00534 786 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 CYP2C19P33261 490 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 KLRC3Q07444 240 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 SAMD1Q6SPF0 538 aaPredicted RBP16.82■□□□□ 0.28
UPF3A-204ENST00000475218 HTATIP2Q9BUP3 242 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 NAPBQ9H115 298 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 CWC22Q9HCG8 908 aaKnown RBP16.82■□□□□ 0.28
UPF3A-204ENST00000475218 CLIP2Q9UDT6 1046 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 IVNS1ABPQ9Y6Y0 642 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 FAM47AQ5JRC9 791 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 B4GALNT3Q6L9W6 998 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 NEDD1Q8NHV4 660 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 MKL1Q969V6 931 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 PRO3102Q9H379 93 aa16.82■□□□□ 0.28
UPF3A-204ENST00000475218 PFASO15067 1338 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 STRNO43815 780 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 NUCB1Q02818 461 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 CTDSPL2Q05D32 466 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 PLS1Q14651 629 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 NECAB2Q7Z6G3 386 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 ZNF589Q86UQ0 364 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-204ENST00000475218 PLEKHM2Q8IWE5 1019 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 ZNF444Q8N0Y2 327 aaPredicted RBP16.81■□□□□ 0.28
UPF3A-204ENST00000475218 NACAP1Q9BZK3 213 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 MROH8Q9H579 483 aa16.81■□□□□ 0.28
UPF3A-204ENST00000475218 COL6A1P12109 1028 aa16.8■□□□□ 0.28
UPF3A-204ENST00000475218 CYBAP13498 195 aa16.8■□□□□ 0.28
UPF3A-204ENST00000475218 NCAPG2Q86XI2 1143 aa16.8■□□□□ 0.28
UPF3A-204ENST00000475218 LRRC47Q8N1G4 583 aaKnown RBP16.8■□□□□ 0.28
UPF3A-204ENST00000475218 RWDD1Q9H446 243 aaPredicted RBP16.8■□□□□ 0.28
UPF3A-204ENST00000475218 TRIOBPQ9H2D6 2365 aa16.8■□□□□ 0.28
UPF3A-204ENST00000475218 RAD21O60216 631 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 TFAP4Q01664 338 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 OLFML2BQ68BL8 750 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 CHD1LQ86WJ1 897 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 RIOX2Q8IUF8 465 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 ABRAQ8N0Z2 381 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 HELLSQ9NRZ9 838 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 ZBTB47Q9UFB7 747 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-204ENST00000475218 ANAPC4Q9UJX5 808 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 SUPT16HQ9Y5B9 1047 aaKnown RBP16.79■□□□□ 0.28
UPF3A-204ENST00000475218 SZT2Q5T011 3432 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 NMIQ13287 307 aaPredicted RBP16.79■□□□□ 0.28
UPF3A-204ENST00000475218 ALX1Q15699 326 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 MFSD14CQ5VZR4 134 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 NBPF3Q9H094 633 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 OSBPL3Q9H4L5 887 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 IL17RBQ9NRM6 502 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 RIPK3Q9Y572 518 aa16.79■□□□□ 0.28
UPF3A-204ENST00000475218 PLXNA1Q9UIW2 1896 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 NMT2O60551 498 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 PDE4BQ07343 736 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 CHRDL2Q6WN34 429 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 DPP9Q86TI2 863 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 GMCL1P1Q8NEA9 526 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 SLF1Q9BQI6 1058 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 C11orf49Q9H6J7 331 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 ZNF287Q9HBT7 754 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 PCDH10Q9P2E7 1040 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 SYNPO2Q9UMS6 1093 aa16.78■□□□□ 0.28
UPF3A-204ENST00000475218 SLC25A27O95847 323 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 TTLL1O95922 423 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 FGAP02671 866 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 FGRP09769 529 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 STAT3P40763 770 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 NOVP48745 357 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 MCMDC2Q4G0Z9 681 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 RASGRP2Q7LDG7 609 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 MAML3Q96JK9 1138 aa16.77■□□□□ 0.28
UPF3A-204ENST00000475218 RBM27Q9P2N5 1060 aaKnown RBP16.77■□□□□ 0.28
UPF3A-204ENST00000475218 DDX20Q9UHI6 824 aaKnown RBP16.77■□□□□ 0.28
UPF3A-204ENST00000475218 LAMA3Q16787 3333 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 EVI5O60447 810 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 PGK2P07205 417 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 TSPY3P0CV98 308 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 TSPY8P0CW00 308 aa16.77■□□□□ 0.27
UPF3A-204ENST00000475218 FXR1P51114 621 aaKnown RBP eCLIP16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms